Jatropha Genome Database

JcCB0163231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0163231.10 - phase: 0 /partial
         (304 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g096460.1 Start codon is not identified Stop codon is...   236   1e-62

>IMGA|Medtr4g096460.1 Start codon is not identified Stop codon is
           not identified, putative chr04_pseudomolecule_IMGAG_V3
           20308460-20311936 E EGN_Mt090430 20090702
          Length = 442

 Score =  236 bits (601), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 143/284 (50%), Positives = 184/284 (64%), Gaps = 23/284 (8%)

Query: 23  PSKTSPFKISFSLN-PSNTEPTPQNPPEFEPEPGPAHPVKLAFEKAKAYKKSTGDSKKTK 81
           P+     K+   +N  +N E +  N  E E +     P+KLAF KAKAYK+S   +    
Sbjct: 24  PTALKTTKLCCVMNKENNKESSEVNSIEAE-KTASVDPIKLAFNKAKAYKESIKSNTDLG 82

Query: 82  LGQNLXXXXXXXXXXXXXXDEEVPASVKVAMENAKEYKKNKGVAGGGDVKGSARSETNSG 141
           + QN                ++V  SVK+AME AK+YK+NKGVA          SET+ G
Sbjct: 83  IEQN----------SADGGKKDVSVSVKIAMEKAKKYKQNKGVA---------VSETDQG 123

Query: 142 LKGGNRENLVSGLVESSASNKEKLSISSMDFMGLNFADKKRGKGLPPGLTPVTDSFPGGD 201
           L+GG+       + ++S S K +LS+S +DF+GL FAD K+ +GLPPGL P +D F   D
Sbjct: 124 LQGGSESTWGENVNDNSVSKKGELSVSKIDFVGLGFADNKKTRGLPPGLVPFSDPFSDDD 183

Query: 202 LPEVEIIVGDTSKFGDPTTSMPKPSQEND--SEFYKPKVSTWGVFPRPGNISKTFGGGRT 259
           LPEVE+IVGDT+ F   TT+ P+P Q  D  SE YKPKVSTWGVFPRP NISKT+GGGRT
Sbjct: 184 LPEVELIVGDTNNFNATTTTAPQPEQTKDDESELYKPKVSTWGVFPRPNNISKTYGGGRT 243

Query: 260 IRPGDVLETAEERTAKDERTKQLLAAYRKKVGLNVDPKLKLECE 303
           IRPG+VLE  EE+ AK+ RTKQ+LAAY+KK GL++DPKLK+ECE
Sbjct: 244 IRPGEVLENEEEKAAKEARTKQMLAAYKKKYGLSIDPKLKIECE 287