Jatropha Genome Database

JcCB0162471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0162471.10 + phase: 1 /pseudo/partial
         (125 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g022860.1 Peptidase aspartic, active site chr05_pseud...    60   3e-10
IMGA|Medtr8g089200.1 Peptidase A1, pepsin chr08_pseudomolecule_I...    55   1e-08
IMGA|Medtr8g089280.1 Peptidase A1, pepsin chr08_pseudomolecule_I...    50   2e-07

>IMGA|Medtr5g022860.1 Peptidase aspartic, active site
           chr05_pseudomolecule_IMGAG_V3 8926331-8923267 E
           EGN_Mt090430 20090702
          Length = 421

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/50 (60%), Positives = 35/50 (70%), Gaps = 2/50 (4%)

Query: 34  MTGYLIVFNRERNVLGWKPSNCYDALNTNTFPIN-PLSPAVPPATAVNPE 82
           MTGY IVF+RE   LGWK SNCYD    ++ P+N   +PAV PA AVNPE
Sbjct: 334 MTGYRIVFDRENMTLGWKESNCYDD-ELSSLPVNRSHAPAVSPAMAVNPE 382


>IMGA|Medtr8g089200.1 Peptidase A1, pepsin
           chr08_pseudomolecule_IMGAG_V3 19111300-19114485 E
           EGN_Mt090430 20090702
          Length = 527

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 16  LTYIVXVLSKVEMXISSD--MTGYLIVFNRERNVLGWKPSNCYDALN-TNTFPINPLSPA 72
           L Y + V+   E+ I     MTGY +VF+RE+ +LGWK S+CYD  +  N  PI   S  
Sbjct: 408 LVYCLAVVKSAELNIIGQNFMTGYRVVFDREKLILGWKKSDCYDIEDHNNAIPIGQHSDK 467

Query: 73  VPPATA 78
           VPPA A
Sbjct: 468 VPPAVA 473


>IMGA|Medtr8g089280.1 Peptidase A1, pepsin
           chr08_pseudomolecule_IMGAG_V3 19148784-19153550 E
           EGN_Mt090430 20090702
          Length = 544

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/49 (55%), Positives = 32/49 (65%), Gaps = 3/49 (6%)

Query: 34  MTGYLIVFNRERNVLGWKPSNCYDALNTNTFPINPL-SPAVPPATAVNP 81
           MTGY IVF+RE   LGWK SNC + +   + P N   SPA+ PA AVNP
Sbjct: 460 MTGYRIVFDRENMNLGWKESNCTEEV--LSIPTNKSHSPAISPAIAVNP 506