Jatropha Genome Database

JcCB0159671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0159671.10 + phase: 0 /pseudo/partial
         (226 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g096350.1 Amine oxidase chr01_pseudomolecule_IMGAG_V3...   323   4e-89
IMGA|Medtr3g104310.1 Amine oxidase chr03_pseudomolecule_IMGAG_V3...    65   3e-11
IMGA|Medtr3g104310.2 Amine oxidase chr03_pseudomolecule_IMGAG_V3...    65   4e-11

>IMGA|Medtr1g096350.1 Amine oxidase chr01_pseudomolecule_IMGAG_V3
           19696555-19691039 E EGN_Mt090430 20090702
          Length = 579

 Score =  323 bits (828), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 152/170 (89%), Positives = 162/170 (95%)

Query: 19  PGIKRLLPSQWRESQFFNNIYELVGVPVVTVQLRYNGWVTELQDLERSRQLRQALGLDNL 78
           PGIKRLLPS+WRE +FFNNIYELVGVPVVTVQLRYNGWVTELQ+LE SRQL++A GLDNL
Sbjct: 355 PGIKRLLPSEWREKEFFNNIYELVGVPVVTVQLRYNGWVTELQNLELSRQLKKATGLDNL 414

Query: 79  LYTPDADFSCFADLALTSPEDYYIEGQGSLLQCVLTPGDPYMPLSNDEIINRVSKQVLAL 138
           LYTPDADFSCFADLAL SPEDYYIEGQGSLLQCVLTPGDPYMPL N+EII+RV+KQV++L
Sbjct: 415 LYTPDADFSCFADLALASPEDYYIEGQGSLLQCVLTPGDPYMPLPNEEIISRVAKQVISL 474

Query: 139 FPSSQGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLSGSVHK 188
           FPSSQGLEV WSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLSGS  K
Sbjct: 475 FPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLSGSYTK 524


>IMGA|Medtr3g104310.1 Amine oxidase chr03_pseudomolecule_IMGAG_V3
           25881950-25879140 E EGN_Mt090430 20090702
          Length = 171

 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 71/132 (53%), Gaps = 7/132 (5%)

Query: 76  DNLLYTPDADFSCFADLALTSPEDYYIEGQGSLLQCVLTPGDPYMPLSNDEIINRVSKQV 135
           D+LL++     S +AD+++T  E YY   Q S+L+ V  P + ++  S+++II     ++
Sbjct: 14  DHLLFSRSPLLSVYADMSVTCKE-YYNPNQ-SMLELVFAPAEEWISRSDEDIIGATMSEL 71

Query: 136 LALFPSS-----QGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLSGSVHKFL 190
             LFP          ++I   VVK  +S+Y+  P  +P RP Q++P++ F+L+G   K  
Sbjct: 72  AKLFPDEISADQSKAKIIKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQK 131

Query: 191 HLPDIPRPAVRG 202
           +L  +    + G
Sbjct: 132 YLASMEGAVLSG 143


>IMGA|Medtr3g104310.2 Amine oxidase chr03_pseudomolecule_IMGAG_V3
           25881950-25879140 E EGN_Mt090430 20090702
          Length = 170

 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 71/132 (53%), Gaps = 7/132 (5%)

Query: 76  DNLLYTPDADFSCFADLALTSPEDYYIEGQGSLLQCVLTPGDPYMPLSNDEIINRVSKQV 135
           D+LL++     S +AD+++T  E YY   Q S+L+ V  P + ++  S+++II     ++
Sbjct: 14  DHLLFSRSPLLSVYADMSVTCKE-YYNPNQ-SMLELVFAPAEEWISRSDEDIIGATMSEL 71

Query: 136 LALFPSS-----QGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLSGSVHKFL 190
             LFP          ++I   VVK  +S+Y+  P  +P RP Q++P++ F+L+G   K  
Sbjct: 72  AKLFPDEISADQSKAKIIKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQK 131

Query: 191 HLPDIPRPAVRG 202
           +L  +    + G
Sbjct: 132 YLASMEGAVLSG 143