Jatropha Genome Database

JcCB0158231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0158231.10 + phase: 1 /pseudo/partial
         (213 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g129290.1 UbiA prenyltransferase chr08_pseudomolecule...   183   6e-47

>IMGA|Medtr8g129290.1 UbiA prenyltransferase
           chr08_pseudomolecule_IMGAG_V3 30490535-30497793 E
           EGN_Mt090430 20090702
          Length = 411

 Score =  183 bits (464), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 100/183 (54%), Positives = 122/183 (66%), Gaps = 8/183 (4%)

Query: 7   RTCNILQRYYVPKFQRHRVKHYLRHSLEKSTVYQKNDSSFLVHAASGQPFEPQPEAYNPK 66
           R   I   Y   +F +  + HY + +  +ST YQ+ +  F+V AA  Q FE +  A++PK
Sbjct: 47  RHKKIQNEYNTLRFWQPSLNHYCKGAEGRST-YQECNGKFVVKAAPEQSFESEHPAFDPK 105

Query: 67  SASKSVLNAIDAFYRFSRPHTVIGTXXXXXXXXXXXXEKLSDLSPLFFTGVLEAVAAALM 126
           +   +V N++DAFYRFSRPHTVIGT            EKLSD+SPLFFTGVLEAV AAL 
Sbjct: 106 NILVAVKNSLDAFYRFSRPHTVIGTALSIISVSLLAAEKLSDISPLFFTGVLEAVVAALF 165

Query: 127 MNIYIVGLNQLSDIEIDKVNKPYLPLASGEYSTGTGVLIVTSFWIMVSASITFFWQLKWH 186
           MNIYIVGLNQLSD+EIDK+NKPYLPLASGEYS  TG +IV      VS+SI  FW L W 
Sbjct: 166 MNIYIVGLNQLSDVEIDKINKPYLPLASGEYSFATGAIIV------VSSSILSFW-LAWI 218

Query: 187 ICS 189
           + S
Sbjct: 219 VGS 221