Jatropha Genome Database

JcCB0156721.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0156721.20 - phase: 0 
         (134 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC235668_16.2 Ribosomal protein L31 AC235668.1 51599-52557 ...   172   6e-44
IMGA|AC235668_16.1 Ribosomal protein L31 AC235668.1 51599-52557 ...   170   2e-43

>IMGA|AC235668_16.2 Ribosomal protein L31 AC235668.1 51599-52557 E
           EGN_Mt090430 20090702
          Length = 134

 Score =  172 bits (435), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 84/124 (67%), Positives = 97/124 (78%), Gaps = 3/124 (2%)

Query: 1   MALSLTSSFLQIKXXXXXXXXXRKVKVNAGMNSNLQVTCRKKDIHPQFYEDAKVYCNGEL 60
           MA  +T++F+Q K          +     G   N  V C+KKDIHP+F+EDAKVYCN EL
Sbjct: 1   MAQCITNTFVQGKPFLPLPTKNNQKGKKVG---NFGVYCKKKDIHPKFHEDAKVYCNNEL 57

Query: 61  VMTTGGTQKEYVVDVWSGNHPFYLGNRSAVVVDADQVEKFRKKFGELSQLMEIPVLKGEI 120
           VMTTGGTQKEYVVDVWSGNHPFYLGNRSA++V  DQVEKFRKKFGELSQ+MEIPVLKGEI
Sbjct: 58  VMTTGGTQKEYVVDVWSGNHPFYLGNRSALMVSDDQVEKFRKKFGELSQIMEIPVLKGEI 117

Query: 121 VLPT 124
           V+P+
Sbjct: 118 VIPS 121


>IMGA|AC235668_16.1 Ribosomal protein L31 AC235668.1 51599-52557 E
           EGN_Mt090430 20090702
          Length = 136

 Score =  170 bits (430), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/125 (67%), Positives = 99/125 (79%), Gaps = 3/125 (2%)

Query: 1   MALSLTSSFLQIKXXXXXXXXXRKVKVNAGMN-SNLQVTCRKKDIHPQFYEDAKVYCNGE 59
           MA  +T++F+Q K         + ++   G    N  V C+KKDIHP+F+EDAKVYCN E
Sbjct: 1   MAQCITNTFVQGKPFLPLPT--KNLQNQKGKKVGNFGVYCKKKDIHPKFHEDAKVYCNNE 58

Query: 60  LVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVVVDADQVEKFRKKFGELSQLMEIPVLKGE 119
           LVMTTGGTQKEYVVDVWSGNHPFYLGNRSA++V  DQVEKFRKKFGELSQ+MEIPVLKGE
Sbjct: 59  LVMTTGGTQKEYVVDVWSGNHPFYLGNRSALMVSDDQVEKFRKKFGELSQIMEIPVLKGE 118

Query: 120 IVLPT 124
           IV+P+
Sbjct: 119 IVIPS 123