Jatropha Genome Database

JcCB0155891.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0155891.20 - phase: 2 /TE/partial
         (371 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g064720.1 SNF2-related; Helicase, C-terminal; Zinc fi...    55   5e-08

>IMGA|Medtr4g064720.1 SNF2-related; Helicase, C-terminal; Zinc
           finger, RING-type; ; chr04_pseudomolecule_IMGAG_V3
           12490383-12497552 E EGN_Mt090430 20090702
          Length = 773

 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/30 (83%), Positives = 29/30 (96%)

Query: 293 RIVRFIIEDTVEERILQLQEKKELVFEGLV 322
           RIVRF+IE+T+EERIL+LQEKKELVFEG V
Sbjct: 723 RIVRFVIENTIEERILKLQEKKELVFEGTV 752