Jatropha Genome Database

JcCB0155891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0155891.10 + phase: 2 /pseudo/partial
         (98 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g100690.1 Dihydrolipoamide acetyltransferase, long fo...   152   4e-38
IMGA|Medtr2g006710.1 Dihydrolipoamide acetyltransferase, long fo...   151   7e-38
IMGA|Medtr2g006710.2 Dihydrolipoamide acetyltransferase, long fo...   149   3e-37

>IMGA|Medtr5g100690.1 Dihydrolipoamide acetyltransferase, long form
           chr05_pseudomolecule_IMGAG_V3 40271137-40278283 F
           EGN_Mt090430 20090702
          Length = 455

 Score =  152 bits (384), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 72/79 (91%), Positives = 75/79 (94%)

Query: 20  GVYGSLLSTPIINPPQSAILGMHSIVSRPMVVDGNVVPRPMMYIALTYDHRLIDGREAVF 79
           GVYGSLLSTPIINPPQSAILGMHSIVSRP VV GNVVPRP+MYIALTYDHR+IDGREAVF
Sbjct: 377 GVYGSLLSTPIINPPQSAILGMHSIVSRPAVVGGNVVPRPLMYIALTYDHRIIDGREAVF 436

Query: 80  FLRRIKDVVEDTRRLLLDV 98
           FLRRIKD VED RRLLLD+
Sbjct: 437 FLRRIKDTVEDPRRLLLDI 455


>IMGA|Medtr2g006710.1 Dihydrolipoamide acetyltransferase, long form
           chr02_pseudomolecule_IMGAG_V3 784152-792373 F
           EGN_Mt090430 20090702
          Length = 453

 Score =  151 bits (382), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 72/79 (91%), Positives = 75/79 (94%)

Query: 20  GVYGSLLSTPIINPPQSAILGMHSIVSRPMVVDGNVVPRPMMYIALTYDHRLIDGREAVF 79
           GVYGSLLSTPIINPPQSAILGMHSIVSRP VV GNVVPRP+MYIALTYDHR+IDGREAVF
Sbjct: 375 GVYGSLLSTPIINPPQSAILGMHSIVSRPAVVGGNVVPRPLMYIALTYDHRIIDGREAVF 434

Query: 80  FLRRIKDVVEDTRRLLLDV 98
           FLRRIKD VED RRLLLD+
Sbjct: 435 FLRRIKDTVEDPRRLLLDI 453


>IMGA|Medtr2g006710.2 Dihydrolipoamide acetyltransferase, long form
           chr02_pseudomolecule_IMGAG_V3 784152-792373 F
           EGN_Mt090430 20090702
          Length = 205

 Score =  149 bits (376), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 72/79 (91%), Positives = 75/79 (94%)

Query: 20  GVYGSLLSTPIINPPQSAILGMHSIVSRPMVVDGNVVPRPMMYIALTYDHRLIDGREAVF 79
           GVYGSLLSTPIINPPQSAILGMHSIVSRP VV GNVVPRP+MYIALTYDHR+IDGREAVF
Sbjct: 127 GVYGSLLSTPIINPPQSAILGMHSIVSRPAVVGGNVVPRPLMYIALTYDHRIIDGREAVF 186

Query: 80  FLRRIKDVVEDTRRLLLDV 98
           FLRRIKD VED RRLLLD+
Sbjct: 187 FLRRIKDTVEDPRRLLLDI 205