Jatropha Genome Database

JcCB0155101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0155101.10 + phase: 0 /partial/short
         (30 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g109930.1 Proteasome component region PCI chr08_pseud...    63   3e-11
IMGA|Medtr8g109840.1 Proteasome component region PCI chr08_pseud...    61   1e-10

>IMGA|Medtr8g109930.1 Proteasome component region PCI
           chr08_pseudomolecule_IMGAG_V3 24795758-24790154 E
           EGN_Mt090430 20090702
          Length = 433

 Score = 63.2 bits (152), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/30 (100%), Positives = 30/30 (100%)

Query: 1   PDAKNALYQATIKQGDFLLNRIQKLSRVID 30
           PDAKNALYQATIKQGDFLLNRIQKLSRVID
Sbjct: 403 PDAKNALYQATIKQGDFLLNRIQKLSRVID 432


>IMGA|Medtr8g109840.1 Proteasome component region PCI
           chr08_pseudomolecule_IMGAG_V3 24729724-24726359 F
           EGN_Mt090430 20090702
          Length = 387

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/30 (100%), Positives = 30/30 (100%)

Query: 1   PDAKNALYQATIKQGDFLLNRIQKLSRVID 30
           PDAKNALYQATIKQGDFLLNRIQKLSRVID
Sbjct: 357 PDAKNALYQATIKQGDFLLNRIQKLSRVID 386