Jatropha Genome Database

JcCB0154921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0154921.10 + phase: 0 
         (362 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g036490.1 TCP transcription factor chr03_pseudomolecu...   139   2e-33
IMGA|Medtr2g132520.1 TCP transcription factor chr02_pseudomolecu...    86   2e-17
IMGA|AC233675_3.1 TCP transcription factor AC233675.1 11574-1264...    86   2e-17
IMGA|Medtr4g109380.1 TCP transcription factor chr04_pseudomolecu...    86   2e-17

>IMGA|Medtr3g036490.1 TCP transcription factor
           chr03_pseudomolecule_IMGAG_V3 9665599-9664445 H
           EGN_Mt090430 20090702
          Length = 384

 Score =  139 bits (351), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/312 (36%), Positives = 151/312 (48%), Gaps = 43/312 (13%)

Query: 44  LKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVD 103
           L++PRIVRVSR FGGKDRHSKVCTIRGLRDRR+RLSVPTAIQLYDLQD+LGL QPSKV+D
Sbjct: 42  LRNPRIVRVSRTFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLGQPSKVID 101

Query: 104 WLLNAAKHXXXXXXXXXXXXVNFA----LNHQAML----SSSEIGASQSNKLNSSISWEE 155
           WLL A K              +F+    L+ Q +L     SS I    S++L+    ++ 
Sbjct: 102 WLLEATK-LDIDKLPPLQFPQSFSQFHPLHSQTLLPFHDQSSNIA---SHELSLGPLYDP 157

Query: 156 NQ---GVVLSSTRPNFWTTDAHLKNKS-KHVATSEKENWTTRRNEEDNKQKSNEV----- 206
           N    G+     R  FW  D+  K K  +    SEK+ W  + NEE+N+           
Sbjct: 158 NSTFVGIQNLMARSKFWDIDSRTKGKEVEREYFSEKDKWI-KTNEEENQVGEASYNNFHQ 216

Query: 207 AASSSFFPRTTHSSSPAGLINNAIPYTSFFQLEHPSFPLSHMGSHGFVSQTDYHH-DLHX 265
            ++   FP  THS+     +NNA+ Y ++   E  S  LS  GS   + Q+ +   D + 
Sbjct: 217 VSTQKLFPMETHSN----FLNNAMSYNNYHS-EASSLSLSQFGSSNGLFQSHHQQVDPNQ 271

Query: 266 XXXXXXXXXXXXXXXXQIFPYFPSHAT---------------TEIDHPKQINHFQMLTPS 310
                            +F    S  T                E D   Q NHFQ +  S
Sbjct: 272 SNGNGLHFPFPFANSQLLFGPSSSSTTPSSSHLSSTPFMNNPVENDPRIQFNHFQFINSS 331

Query: 311 AQTLFPNSLTPT 322
           +    P+ L P+
Sbjct: 332 SSQTMPHPLIPS 343


>IMGA|Medtr2g132520.1 TCP transcription factor
           chr02_pseudomolecule_IMGAG_V3 32076074-32073489 E
           EGN_Mt090430 20090702
          Length = 329

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/59 (67%), Positives = 46/59 (77%)

Query: 52  VSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAK 110
           + RA G KDRHSKV T +G RDRRVRLS  TAIQ YD+QDRLG ++PSK VDWL+  AK
Sbjct: 18  IVRATGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAK 76


>IMGA|AC233675_3.1 TCP transcription factor AC233675.1 11574-12645 E
           EGN_Mt090430 20090702
          Length = 335

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/74 (58%), Positives = 51/74 (68%), Gaps = 5/74 (6%)

Query: 42  LRLKDPRIVRVS-----RAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLN 96
           +R     IV+V      RA G KDRHSKV T +G RDRRVRLS  TAI+ YD+QDRLG +
Sbjct: 1   MRSTGGEIVQVEGGHIVRATGKKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYD 60

Query: 97  QPSKVVDWLLNAAK 110
           +PSK VDWL+  AK
Sbjct: 61  RPSKAVDWLIKKAK 74


>IMGA|Medtr4g109380.1 TCP transcription factor
           chr04_pseudomolecule_IMGAG_V3 24475212-24474141 E
           EGN_Mt090430 20090702
          Length = 335

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/74 (58%), Positives = 51/74 (68%), Gaps = 5/74 (6%)

Query: 42  LRLKDPRIVRVS-----RAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLN 96
           +R     IV+V      RA G KDRHSKV T +G RDRRVRLS  TAI+ YD+QDRLG +
Sbjct: 1   MRSTGGEIVQVEGGHIVRATGKKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYD 60

Query: 97  QPSKVVDWLLNAAK 110
           +PSK VDWL+  AK
Sbjct: 61  RPSKAVDWLIKKAK 74