Jatropha Genome Database

JcCB0154691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0154691.10 - phase: 0 /partial
         (157 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g016760.1 Chorismate mutase chr01_pseudomolecule_IMGA...   187   2e-48
IMGA|Medtr6g013840.1 Chorismate mutase chr06_pseudomolecule_IMGA...   166   3e-42
IMGA|Medtr1g016760.3 Chorismate mutase chr01_pseudomolecule_IMGA...   164   2e-41
IMGA|Medtr8g065610.1 Chorismate mutase chr08_pseudomolecule_IMGA...   114   1e-26
IMGA|Medtr5g046100.1 Chorismate mutase chr05_pseudomolecule_IMGA...   108   1e-24
IMGA|Medtr1g016760.2 Chorismate mutase chr01_pseudomolecule_IMGA...   102   1e-22
IMGA|Medtr5g046110.1 Chorismate mutase chr05_pseudomolecule_IMGA...    81   2e-16

>IMGA|Medtr1g016760.1 Chorismate mutase
           chr01_pseudomolecule_IMGAG_V3 3312830-3316332 E
           EGN_Mt090430 20090702
          Length = 254

 Score =  187 bits (475), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 88/156 (56%), Positives = 112/156 (71%), Gaps = 1/156 (0%)

Query: 2   LHPIADSININKKVWDLYFRDVLPRLVKDGNDGNCGSTAVCDTICLQVLSKRIHYGKFVA 61
           LHP A SININK +W +YF D+LP  V  G+DGN   TA  D   LQ +SKR+HYGKFVA
Sbjct: 100 LHPGAASININKSLWKMYFHDLLPLFVASGDDGNYAQTAASDLSLLQAISKRVHYGKFVA 159

Query: 62  EAKFRNSPDAYKAAIRAQDRDRLMDLLTYSKVEEAIKKRVEMKAITFGQEVTICFGDEDT 121
           E KFR SP  Y+  IR++D++ LM LLT+  VEE +KKRVE KA  FGQ++++   D D+
Sbjct: 160 EVKFRESPQDYEPLIRSKDKEGLMKLLTFKSVEEMVKKRVEKKATLFGQDISLNSSD-DS 218

Query: 122 DPVYKIDPGLVAELYGEWIMPLTKEVQVEYLLRRLD 157
               K DP + ++LY +W++PLTKEVQVEYLLRRLD
Sbjct: 219 KGKQKFDPSVASKLYEKWVIPLTKEVQVEYLLRRLD 254


>IMGA|Medtr6g013840.1 Chorismate mutase
           chr06_pseudomolecule_IMGAG_V3 3057596-3056239 E
           EGN_Mt090430 20090702
          Length = 115

 Score =  166 bits (421), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 78/108 (72%), Positives = 95/108 (87%)

Query: 50  LSKRIHYGKFVAEAKFRNSPDAYKAAIRAQDRDRLMDLLTYSKVEEAIKKRVEMKAITFG 109
           LSKRIHYGKFVAEAKF+ +PD+YKAAI AQD+DRLM+LLTY +VEE+IK+RV +KA T+G
Sbjct: 8   LSKRIHYGKFVAEAKFQAAPDSYKAAIIAQDKDRLMELLTYPEVEESIKRRVAVKAKTYG 67

Query: 110 QEVTICFGDEDTDPVYKIDPGLVAELYGEWIMPLTKEVQVEYLLRRLD 157
           QEV +   D+ T+PVYKI+P LVA+LY +WIMPLTKEVQV YLLR+LD
Sbjct: 68  QEVAVNLKDQKTEPVYKINPSLVADLYSDWIMPLTKEVQVAYLLRKLD 115


>IMGA|Medtr1g016760.3 Chorismate mutase
           chr01_pseudomolecule_IMGAG_V3 3312830-3316332 E
           EGN_Mt090430 20090702
          Length = 139

 Score =  164 bits (414), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 77/140 (55%), Positives = 100/140 (71%), Gaps = 1/140 (0%)

Query: 18  LYFRDVLPRLVKDGNDGNCGSTAVCDTICLQVLSKRIHYGKFVAEAKFRNSPDAYKAAIR 77
           +YF D+LP  V  G+DGN   TA  D   LQ +SKR+HYGKFVAE KFR SP  Y+  IR
Sbjct: 1   MYFHDLLPLFVASGDDGNYAQTAASDLSLLQAISKRVHYGKFVAEVKFRESPQDYEPLIR 60

Query: 78  AQDRDRLMDLLTYSKVEEAIKKRVEMKAITFGQEVTICFGDEDTDPVYKIDPGLVAELYG 137
           ++D++ LM LLT+  VEE +KKRVE KA  FGQ++++   D D+    K DP + ++LY 
Sbjct: 61  SKDKEGLMKLLTFKSVEEMVKKRVEKKATLFGQDISLNSSD-DSKGKQKFDPSVASKLYE 119

Query: 138 EWIMPLTKEVQVEYLLRRLD 157
           +W++PLTKEVQVEYLLRRLD
Sbjct: 120 KWVIPLTKEVQVEYLLRRLD 139


>IMGA|Medtr8g065610.1 Chorismate mutase
           chr08_pseudomolecule_IMGAG_V3 12387052-12383209 E
           EGN_Mt090430 20090702
          Length = 88

 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/90 (63%), Positives = 69/90 (76%), Gaps = 11/90 (12%)

Query: 68  SPDAYKAAIRAQDRDRLMDLLTYSKVEEAIKKRVEMKAITFGQEVTICFGDEDTDPVYKI 127
           +PD+YKAAI AQD+DRLM+LLTY +VEE+IK+RV            I   D+ TDPVYKI
Sbjct: 10  APDSYKAAIVAQDKDRLMELLTYPEVEESIKRRV-----------AINLKDQKTDPVYKI 58

Query: 128 DPGLVAELYGEWIMPLTKEVQVEYLLRRLD 157
           +P LVA+LY +WIMPLTKEVQV YLLR+LD
Sbjct: 59  NPSLVADLYSDWIMPLTKEVQVAYLLRKLD 88


>IMGA|Medtr5g046100.1 Chorismate mutase
           chr05_pseudomolecule_IMGAG_V3 19356967-19356292 E
           EGN_Mt090430 20090702
          Length = 100

 Score =  108 bits (269), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/77 (66%), Positives = 61/77 (79%)

Query: 81  RDRLMDLLTYSKVEEAIKKRVEMKAITFGQEVTICFGDEDTDPVYKIDPGLVAELYGEWI 140
           + RL++LLTY  VEE+++KRVEMKA TF QEV I    +  DPVY+I  GL+  LYG+WI
Sbjct: 24  KKRLLELLTYESVEESVQKRVEMKARTFSQEVKINEAGDVADPVYRIKSGLIGNLYGKWI 83

Query: 141 MPLTKEVQVEYLLRRLD 157
           MPLTKEVQVEYLLRRLD
Sbjct: 84  MPLTKEVQVEYLLRRLD 100


>IMGA|Medtr1g016760.2 Chorismate mutase
           chr01_pseudomolecule_IMGAG_V3 3312830-3316332 E
           EGN_Mt090430 20090702
          Length = 178

 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 54/78 (69%)

Query: 2   LHPIADSININKKVWDLYFRDVLPRLVKDGNDGNCGSTAVCDTICLQVLSKRIHYGKFVA 61
           LHP A SININK +W +YF D+LP  V  G+DGN   TA  D   LQ +SKR+HYGKFVA
Sbjct: 100 LHPGAASININKSLWKMYFHDLLPLFVASGDDGNYAQTAASDLSLLQAISKRVHYGKFVA 159

Query: 62  EAKFRNSPDAYKAAIRAQ 79
           E KFR SP  Y+  IR++
Sbjct: 160 EVKFRESPQDYEPLIRSK 177


>IMGA|Medtr5g046110.1 Chorismate mutase
           chr05_pseudomolecule_IMGAG_V3 19359456-19356973 H
           EGN_Mt090430 20090702
          Length = 174

 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 33/49 (67%), Positives = 43/49 (87%)

Query: 1   VLHPIADSININKKVWDLYFRDVLPRLVKDGNDGNCGSTAVCDTICLQV 49
           VLH  A+SIN+NK +W++YF+++LPRLVK G+DGN GS AVCDT+CLQV
Sbjct: 107 VLHHCANSINLNKMIWNMYFKELLPRLVKAGDDGNSGSAAVCDTLCLQV 155