Jatropha Genome Database

JcCB0152261.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0152261.10 - phase: 0 /partial
         (174 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g097010.1 Zinc finger, RING-type; Site-specific recom...   136   5e-33

>IMGA|Medtr7g097010.1 Zinc finger, RING-type; Site-specific
           recombinase chr07_pseudomolecule_IMGAG_V3
           21862208-21856174 E EGN_Mt090430 20090702
          Length = 744

 Score =  136 bits (343), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 74/128 (57%), Positives = 88/128 (68%), Gaps = 7/128 (5%)

Query: 47  DDSPKFSMDDFEALGXXXXXXXXXXXXXXXXVVGERLLFSNVTRLGFAAGHGSPALRTEE 106
           DD P FSMDDFEALG                VVGER LFS+VTRLGFAAGH SP+  T+E
Sbjct: 624 DDPPTFSMDDFEALGNSALSSSPP-------VVGERKLFSSVTRLGFAAGHDSPSFPTQE 676

Query: 107 TSALHNNKVTNDSSSVSGTKNSGTPSFANVISRVKSGEALDAPKTNEIGKKGKKSSRVLL 166
           TS LH+N     SS  +G +N  T S++NVISR +S    +APKTN++GKKGKK +RVLL
Sbjct: 677 TSDLHSNNSIAGSSGTAGLRNGETLSYSNVISRAESNGTSNAPKTNDLGKKGKKPNRVLL 736

Query: 167 STAGGRRY 174
           ST+GGRRY
Sbjct: 737 STSGGRRY 744