Jatropha Genome Database

JcCB0151651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0151651.10 + phase: 1 /pseudo/partial
         (168 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g068660.1 Zinc finger, RING-type chr05_pseudomolecule...    53   8e-08
IMGA|Medtr5g068640.1 hypothetical protein chr05_pseudomolecule_I...    52   1e-07

>IMGA|Medtr5g068660.1 Zinc finger, RING-type
           chr05_pseudomolecule_IMGAG_V3 24616274-24617149 E
           EGN_Mt090430 20090702
          Length = 164

 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 20/26 (76%), Positives = 23/26 (88%)

Query: 105 KEPTFNCPICMGPFVEETSTKCGHIF 130
           K+P  +CPICMGPFVEE +TKCGHIF
Sbjct: 102 KKPLISCPICMGPFVEEMTTKCGHIF 127


>IMGA|Medtr5g068640.1 hypothetical protein
           chr05_pseudomolecule_IMGAG_V3 24598594-24599675 E
           EGN_Mt090430 20090702
          Length = 139

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 21/34 (61%), Positives = 26/34 (76%)

Query: 105 KEPTFNCPICMGPFVEETSTKCGHIFLXGLHXGC 138
           K+   +CPICMGPFVEE +T+CGHIFL  L+  C
Sbjct: 101 KKIVLSCPICMGPFVEEMTTRCGHIFLQDLYQDC 134