Jatropha Genome Database

JcCB0151131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0151131.10 + phase: 0 /partial
         (127 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g110820.1 binding, putative chr07_pseudomolecule_IMGA...    77   2e-15

>IMGA|Medtr7g110820.1 binding, putative
          chr07_pseudomolecule_IMGAG_V3 25872656-25873669 H
          EGN_Mt090430 20090702
          Length = 76

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 33/44 (75%), Positives = 38/44 (86%)

Query: 2  LMPEWSKSVQDWNSMIGPLIDKMFAEPSNATIVRFLSYISEHLA 45
          L+PEWSKSVQDWN++IGPLIDKMF +PSN  IV+F SYISE L 
Sbjct: 14 LVPEWSKSVQDWNNLIGPLIDKMFTDPSNPVIVKFFSYISEDLT 57