Jatropha Genome Database

JcCB0150901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0150901.10 + phase: 0 /pseudo/partial
         (257 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|CU571152_22.1 Forkhead-associated CU571152.5 100554-94827 E...   265   2e-71
IMGA|Medtr5g017290.1 Forkhead-associated chr05_pseudomolecule_IM...   258   1e-69
IMGA|Medtr4g024040.1 Fumarate reductase/succinate dehydrogenase ...    58   5e-09

>IMGA|CU571152_22.1 Forkhead-associated CU571152.5 100554-94827 E
           EGN_Mt090430 20090702
          Length = 663

 Score =  265 bits (677), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 122/176 (69%), Positives = 144/176 (81%)

Query: 65  EQSIESGTPIDIVSSLKSYERARRLRVAIIHGMARMAAIMASTYKAYLGVGLGPLSFLTK 124
           EQSI+SG PI + S+L+SYE  R+LRVA+IHGMARMAA+MASTYKAYLGVGLGPL FLT 
Sbjct: 405 EQSIKSGNPIKVDSALRSYESERKLRVAVIHGMARMAALMASTYKAYLGVGLGPLEFLTN 464

Query: 125 YRIPHPGRVGGRFFIDIAMPVMLSWVLGGNSSKLEGRSQCCRLSDKASDQLRTWFEDDDA 184
           +RIPHPGRVGGRFF+DI MP ML+W+LGGNS KLEGR   CRLSDKA+ QLR WFEDDDA
Sbjct: 465 FRIPHPGRVGGRFFVDILMPSMLNWILGGNSDKLEGRPISCRLSDKANGQLRQWFEDDDA 524

Query: 185 LERALNAEWFLLPLGNKVVVSEPICLSRNENTPCVVGKVSHKDFPGMSIVIPSPQV 240
           LERA+N EWFLLP G +  +S+PI L++NE  PC++G    +  PG SI I SP+V
Sbjct: 525 LERAINGEWFLLPCGEETGLSKPIRLTQNEMKPCIIGSAVQEGDPGSSITITSPKV 580


>IMGA|Medtr5g017290.1 Forkhead-associated
           chr05_pseudomolecule_IMGAG_V3 6182248-6184909 E
           EGN_Mt090430 20090702
          Length = 350

 Score =  258 bits (660), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 123/181 (67%), Positives = 143/181 (79%), Gaps = 5/181 (2%)

Query: 65  EQSIESGTPIDIVSSLKSYERARRLRVAIIHGMARMAAIMASTYKAYLGVGLGPLSFLTK 124
           +QS +SG+ IDI SSLKSYER RRLRV  +HGMARMAA+MASTYKAYLGVGLGP  FLTK
Sbjct: 87  QQSAKSGSTIDIASSLKSYERERRLRVTFVHGMARMAALMASTYKAYLGVGLGPFEFLTK 146

Query: 125 YRIPHPGRVGGRFFIDIAMPVMLSWVLGGNSSKLEGRSQCCRLSDKASDQLRTWFEDDDA 184
           +RIPHPGRVGGRFFI  +MP+ML+WVLGGNSSKLEGR  CCRLSDKASDQL TWFEDDDA
Sbjct: 147 FRIPHPGRVGGRFFIQKSMPLMLNWVLGGNSSKLEGRPLCCRLSDKASDQLHTWFEDDDA 206

Query: 185 LERALNAEWFLLPLGNKVVVSEPICLSRNENTPCVVGKVS-----HKDFPGMSIVIPSPQ 239
           LER +N EW LLP G+     +PI L++++  P ++G  S      +D+PG  I IP PQ
Sbjct: 207 LERTINGEWILLPCGDVPGHVKPISLNQDDTKPYIIGNTSAMSIEQEDYPGSLITIPLPQ 266

Query: 240 V 240
           V
Sbjct: 267 V 267


>IMGA|Medtr4g024040.1 Fumarate reductase/succinate dehydrogenase
           flavoprotein, N-terminal chr04_pseudomolecule_IMGAG_V3
           5419751-5415352 E EGN_Mt090430 20090702
          Length = 465

 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 45/79 (56%)

Query: 76  IVSSLKSYERARRLRVAIIHGMARMAAIMASTYKAYLGVGLGPLSFLTKYRIPHPGRVGG 135
           + S+L+ YE+ R  RV ++H  +RMA+ M   Y+ Y+   L P S LT  +I HPG    
Sbjct: 386 VTSALRRYEKKRIPRVRVLHTASRMASKMLVNYRPYIQFQLWPHSKLTDMQIKHPGVHVA 445

Query: 136 RFFIDIAMPVMLSWVLGGN 154
           R  +   +P  ++W++ G+
Sbjct: 446 RALLKFTLPQFVNWMISGH 464