Jatropha Genome Database

JcCB0149161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0149161.10 + phase: 0 /pseudo/partial
         (226 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g149540.1 Homeodomain-related; chr03_pseudomolecule_I...   108   2e-24

>IMGA|Medtr3g149540.1 Homeodomain-related;
           chr03_pseudomolecule_IMGAG_V3 39154744-39146673 E
           EGN_Mt090430 20090702
          Length = 1101

 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/156 (44%), Positives = 99/156 (63%), Gaps = 6/156 (3%)

Query: 75  CDLEYELDVFPDVSTEASTEAAACVKVLIASGLPSDSTHPNSTTVEAPLTINIPNGKPCR 134
            DL+ EL+  P    E+++E +ACVKV+IAS   S+ST P+S T+EAP+T+N P     R
Sbjct: 91  SDLDCELESLPSGCAESTSETSACVKVIIASRTLSEST-PSSATIEAPMTVNFPVCHSSR 149

Query: 135 FTSENLQPAI-MKGVNITVPVSVQKQPLPAVTSAEGLDANGS--GSGVPRRKRKPWSDSE 191
            TS   QP+I M   +I  PV+V +Q LP V+S + L+   +  G+   +RKRK WS+ E
Sbjct: 150 -TSNISQPSILMDQSSIMFPVTVPRQTLPTVSSTDALETKVTIGGTAASKRKRKAWSEEE 208

Query: 192 DLELIAAVQKYGEGNWANILRSE-VKWDRTASQLSQ 226
           D  L  AVQK+GEGNWA + + +     R+A+QLSQ
Sbjct: 209 DNLLRDAVQKWGEGNWATMAKGDSFPIKRSATQLSQ 244