Jatropha Genome Database

JcCB0148821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0148821.10 - phase: 0 /partial
         (182 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g084200.1 Zinc finger, RING-type chr04_pseudomolecule...    49   1e-06

>IMGA|Medtr4g084200.1 Zinc finger, RING-type
           chr04_pseudomolecule_IMGAG_V3 17629721-17627410 H
           EGN_Mt090430 20090702
          Length = 223

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 39/92 (42%), Gaps = 24/92 (26%)

Query: 101 VQRDFNENDYEMLLALDENNHQRGASVNRINSLP----------------------ESTV 138
           + RDFNE DY+ L  L      R  S   IN+LP                      E + 
Sbjct: 95  LDRDFNEIDYDTLRVLAFGT--RSMSEEEINALPIHKHKVTGPIKCFMIKQDFKGEEGSA 152

Query: 139 QTDNFEETCAICLETPTVGETIRHLPCLHKFH 170
                  TCAICL+    GE +R LPCLH+FH
Sbjct: 153 NDQEDGLTCAICLDQVQRGELVRSLPCLHQFH 184