Jatropha Genome Database

JcCB0148531.10

BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0148531.10 - phase: 2 /pseudo/partial
         (171 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g111220.2 Helix-loop-helix DNA-binding chr04_pseudomo...    93   5e-20
IMGA|Medtr4g111220.1 Helix-loop-helix DNA-binding chr04_pseudomo...    93   6e-20
IMGA|Medtr2g096770.1 Helix-loop-helix DNA-binding chr02_pseudomo...    90   4e-19
IMGA|Medtr1g042530.1 Helix-loop-helix DNA-binding chr01_pseudomo...    75   2e-14
IMGA|Medtr2g103480.1 Peptidase S10, serine carboxypeptidase; Hel...    73   6e-14

>IMGA|Medtr4g111220.2 Helix-loop-helix DNA-binding
           chr04_pseudomolecule_IMGAG_V3 25379957-25377285 E
           EGN_Mt090430 20090702
          Length = 193

 Score = 93.2 bits (230), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 71/118 (60%)

Query: 4   DSSARSRTKACREKMRRDRLNERFMDLYSILEPGNFQNSNKVAILRYAAHLLNHLRIEAK 63
           +S A + +KACREK+RRDRLN++F++L SILEPG    ++K AIL  A  ++  LR EA+
Sbjct: 29  ESCAATSSKACREKLRRDRLNDKFIELGSILEPGRPAKTDKAAILIDAVRMVTQLRGEAQ 88

Query: 64  ELKDKNKFLQETIXXXXXXXXXXXXXXXXXXAEKKRMENAVESLSIPSSFAPQFSFYP 121
           +LKD N  LQE I                  AEK+++E  ++S++ P SF P  +  P
Sbjct: 89  KLKDANSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQLKSMNAPPSFLPTPTALP 146


>IMGA|Medtr4g111220.1 Helix-loop-helix DNA-binding
           chr04_pseudomolecule_IMGAG_V3 25380817-25377285 E
           EGN_Mt090430 20090702
          Length = 237

 Score = 93.2 bits (230), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 71/118 (60%)

Query: 4   DSSARSRTKACREKMRRDRLNERFMDLYSILEPGNFQNSNKVAILRYAAHLLNHLRIEAK 63
           +S A + +KACREK+RRDRLN++F++L SILEPG    ++K AIL  A  ++  LR EA+
Sbjct: 73  ESCAATSSKACREKLRRDRLNDKFIELGSILEPGRPAKTDKAAILIDAVRMVTQLRGEAQ 132

Query: 64  ELKDKNKFLQETIXXXXXXXXXXXXXXXXXXAEKKRMENAVESLSIPSSFAPQFSFYP 121
           +LKD N  LQE I                  AEK+++E  ++S++ P SF P  +  P
Sbjct: 133 KLKDANSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQLKSMNAPPSFLPTPTALP 190


>IMGA|Medtr2g096770.1 Helix-loop-helix DNA-binding
           chr02_pseudomolecule_IMGAG_V3 22457718-22460247 E
           EGN_Mt090430 20090702
          Length = 230

 Score = 90.1 bits (222), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/124 (41%), Positives = 72/124 (58%), Gaps = 11/124 (8%)

Query: 4   DSSARSRTKACREKMRRDRLNERFMDLYSILEPGNFQNSNKVAILRYAAHLLNHLRIEAK 63
           DS A S +KACREK+RRDRLN++F++L SILEPG    ++K AIL  A  ++  LR EA+
Sbjct: 66  DSCAPSSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQ 125

Query: 64  ELKDKNKFLQETIXXXXXXXXXXXXXXXXXXAEKKRMENAVESL-----------SIPSS 112
           +LKD N  LQE I                  AEK+++E  V+S+           +IP++
Sbjct: 126 KLKDSNSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQVKSMNTQPGFLTHPPAIPAA 185

Query: 113 FAPQ 116
           FA Q
Sbjct: 186 FAHQ 189


>IMGA|Medtr1g042530.1 Helix-loop-helix DNA-binding
           chr01_pseudomolecule_IMGAG_V3 9772115-9767989 E
           EGN_Mt090430 20090702
          Length = 248

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 69/115 (60%), Gaps = 3/115 (2%)

Query: 4   DSSARSRTKACREKMRRDRLNER--FMDLYSILEPGNFQNSNKVAILRYAAHLLNHLRIE 61
           +S  ++ TKACREK+RR++LNER  F DL ++LEPG    ++K AIL  A  +L+ L+ E
Sbjct: 87  ESCYKAGTKACREKLRREKLNERHVFCDLSAVLEPGRPVRTDKPAILDDAIRVLSQLKTE 146

Query: 62  AKELKDKNKFLQETIXXXXXXXXXXXXXXXXXXAEKKRMENAVESLSI-PSSFAP 115
           A+ELK+ N+ L E I                  A+K+++E  ++S+ + P+ F P
Sbjct: 147 AQELKESNEKLLEEIKCLKAEKNELREEKLVLKADKEKIEKQLKSMPVSPAGFMP 201


>IMGA|Medtr2g103480.1 Peptidase S10, serine carboxypeptidase;
           Helix-loop-helix DNA-binding
           chr02_pseudomolecule_IMGAG_V3 24124594-24127471 E
           EGN_Mt090430 20090702
          Length = 260

 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 62/105 (59%)

Query: 9   SRTKACREKMRRDRLNERFMDLYSILEPGNFQNSNKVAILRYAAHLLNHLRIEAKELKDK 68
           S +KA REK+RRD+LN+RFM+L S+LEP     ++KV++L  A  ++  LR EA+ LK++
Sbjct: 107 SSSKAGREKVRRDKLNDRFMELSSVLEPDTLPKTDKVSLLNDAVRVVTQLRNEAERLKER 166

Query: 69  NKFLQETIXXXXXXXXXXXXXXXXXXAEKKRMENAVESLSIPSSF 113
           N  L+E +                   +K+++E  V+  S+ S+F
Sbjct: 167 NDELREKVKELKAEKKELRDEKNKLKLDKEKLEQQVKLASVQSNF 211