Jatropha Genome Database
- JcCB0147481.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0147481.10 + phase: 0 /partial
(261 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g165780.1 ESF1 homolog, related chr04_pseudomolecule_... 255 2e-68
IMGA|Medtr4g098590.1 NUC153 chr04_pseudomolecule_IMGAG_V3 212858... 176 1e-44
IMGA|Medtr3g137250.1 hypothetical protein chr03_pseudomolecule_I... 107 7e-24
IMGA|Medtr3g136940.1 hypothetical protein chr03_pseudomolecule_I... 107 7e-24
IMGA|Medtr3g136910.1 hypothetical protein chr03_pseudomolecule_I... 56 2e-08
>IMGA|Medtr4g165780.1 ESF1 homolog, related
chr04_pseudomolecule_IMGAG_V3 41847556-41851787 E
EGN_Mt090430 20090702
Length = 737
Score = 255 bits (651), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 133/273 (48%), Positives = 170/273 (62%), Gaps = 18/273 (6%)
Query: 1 AGDLYVVLSSFLPKRGAIKSVAVYPSEFGLERMKEEELHGPVGLFXXXXXXXXXXXXX-- 58
A DLYV+ SS P G IKSV +YP+EFGL+RM EEE+ GPVGLF
Sbjct: 228 AVDLYVLFSSLAPTSGLIKSVTIYPTEFGLQRMNEEEVKGPVGLFDGENKRSDEDGSAEE 287
Query: 59 ---------XXXXXXXLRAYEKSRLRYFYAVVECDSIATAEHLYKACDGVEFERSSNVLD 109
LRAYEKSR+RY++A+VECDS ATA+H+YK DGVEFE SSN LD
Sbjct: 288 ETDEEDFHDSDSDNEKLRAYEKSRMRYYFALVECDSSATADHIYKENDGVEFEHSSNPLD 347
Query: 110 LRFVPDSMEFKHPPRDIAEEAPTNYDGLDFHTKALQHSNIAISWDEDEPQRVKTLKRKFN 169
LRF+PD MEFK PP+D+A E P NY+ DF+++ALQHS + ++WDEDEP R TLKRKF
Sbjct: 348 LRFIPDDMEFKQPPKDVASEIPANYENKDFYSRALQHSKVELTWDEDEPLRANTLKRKFT 407
Query: 170 ADQLADLELKEFLAXXXXXXXXXXXXXVAEGEVDKKIKKRD-KYRALIXXXXXXXXXXXX 228
+QLA LE+ E +A E D++ +K+D KY AL+
Sbjct: 408 DEQLAQLEMDELIA----SDVSDSDDSEDNNETDERPRKKDNKYLALL--DNNSDEDGDD 461
Query: 229 XXXXMEITFHTGLEGLSKRLLERKDKKSESVWE 261
ME+TF+TGL+ +SK ++E+KDKKS +VWE
Sbjct: 462 DAMDMEVTFNTGLQDISKHIMEKKDKKSRTVWE 494
>IMGA|Medtr4g098590.1 NUC153 chr04_pseudomolecule_IMGAG_V3
21285874-21290001 H EGN_Mt090430 20090702
Length = 711
Score = 176 bits (446), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 115/174 (66%), Gaps = 9/174 (5%)
Query: 1 AGDLYVVLSSFLPKRGAIKSVAVYPSEFGLERMKEEELHGPVGLFXXXXXXXXXXXXXXX 60
A DLYVV +SF+P G IKSVA+YP+EFGL+R+KEE +HGPV LF
Sbjct: 170 AVDLYVVFNSFVPPNGMIKSVAIYPTEFGLQRLKEENIHGPV-LFHNENDISDEDINEN- 227
Query: 61 XXXXXLRAYEKSRLRYFYAVVECDSIATAEHLYKACDGVEFERSSNVLDLRFVPDSMEFK 120
+RAY+KS +R+++AVVECDS TA H+YK C+G++F S LDLRF+PD EFK
Sbjct: 228 -----MRAYQKSMMRFYHAVVECDSSTTAAHIYKECNGLDF--LSTPLDLRFIPDFWEFK 280
Query: 121 HPPRDIAEEAPTNYDGLDFHTKALQHSNIAISWDEDEPQRVKTLKRKFNADQLA 174
D+ E P NY DF +ALQHS + +WD+D+P R +TL+RKF +Q++
Sbjct: 281 QESEDVVTEVPANYVVKDFGPRALQHSKVDFTWDDDDPLRKRTLRRKFTDEQVS 334
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 11/120 (9%)
Query: 143 ALQHSNIAISWDEDEPQRVKTLKRKFNADQLADLELKEFLAXXXXXXXXXXXXXVAEGEV 202
L H + SW V+T+K + LA LE K++LA A+ ++
Sbjct: 367 GLYHYDDIRSWFLKTIGNVETMK-----NTLAQLEWKDYLASDASESDDNTE---ADDQL 418
Query: 203 DKKIKKRDKYRALI-XXXXXXXXXXXXXXXXMEITFHTGLEGLSKRLLERKDKKSESVWE 261
D+K +K+ Y L+ ME+TFH+GLE L+K+L+E+KDK E+VWE
Sbjct: 419 DEKARKQSIYLNLVYSGNGSDEDAEHDIGQEMEVTFHSGLESLNKKLMEKKDK--ETVWE 476
>IMGA|Medtr3g137250.1 hypothetical protein
chr03_pseudomolecule_IMGAG_V3 34776619-34775274 H
EGN_Mt090430 20090702
Length = 216
Score = 107 bits (266), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 67/99 (67%), Gaps = 2/99 (2%)
Query: 76 YFYAVVECDSIATAEHLYKACDGVEFERSSNVLDLRFVPDSMEFKHPPRDIAEEAPTNYD 135
+++AVVECDS TA H+YK C+G+EF S DLRF+PD EFK P D+ + PTNY
Sbjct: 61 FYHAVVECDSSTTAAHIYKECNGLEFLSSP--FDLRFIPDIWEFKQEPMDVVTKVPTNYV 118
Query: 136 GLDFHTKALQHSNIAISWDEDEPQRVKTLKRKFNADQLA 174
DF +ALQHS + W++D+P R +TL RKF +Q++
Sbjct: 119 VKDFGPRALQHSKVDFDWEDDDPFRKRTLSRKFTDEQVS 157
>IMGA|Medtr3g136940.1 hypothetical protein
chr03_pseudomolecule_IMGAG_V3 34650191-34648846 H
EGN_Mt090430 20090702
Length = 216
Score = 107 bits (266), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 67/99 (67%), Gaps = 2/99 (2%)
Query: 76 YFYAVVECDSIATAEHLYKACDGVEFERSSNVLDLRFVPDSMEFKHPPRDIAEEAPTNYD 135
+++AVVECDS TA H+YK C+G+EF S DLRF+PD EFK P D+ + PTNY
Sbjct: 61 FYHAVVECDSSTTAAHIYKECNGLEFLSSP--FDLRFIPDIWEFKQEPMDVVTKVPTNYV 118
Query: 136 GLDFHTKALQHSNIAISWDEDEPQRVKTLKRKFNADQLA 174
DF +ALQHS + W++D+P R +TL RKF +Q++
Sbjct: 119 VKDFGPRALQHSKVDFDWEDDDPFRKRTLSRKFTDEQVS 157
>IMGA|Medtr3g136910.1 hypothetical protein
chr03_pseudomolecule_IMGAG_V3 34646763-34645450 H
EGN_Mt090430 20090702
Length = 181
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 178 LKEFLAXXXXXXXXXXXXXVAEGEVDKKIKKRDKYRALI-XXXXXXXXXXXXXXXXMEIT 236
+KE+LA + ++D+K +K+D Y +L+ ME+T
Sbjct: 28 MKEYLASDASESDDNSE---TDDQLDEKARKQDMYLSLVYSGNGSNEDAEHDASQEMEVT 84
Query: 237 FHTGLEGLSKRLLERKDKKSESVWE 261
FH+GLE L+K+L E+KDK+SE+VWE
Sbjct: 85 FHSGLECLNKKLTEKKDKRSETVWE 109