Jatropha Genome Database

JcCB0143731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0143731.10 + phase: 0 /pseudo
         (271 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g146580.1 CDP-alcohol phosphatidyltransferase chr01_p...   105   2e-23
IMGA|Medtr7g005180.1 CDP-alcohol phosphatidyltransferase chr07_p...   100   1e-21

>IMGA|Medtr1g146580.1 CDP-alcohol phosphatidyltransferase
           chr01_pseudomolecule_IMGAG_V3 32448704-32445872 F
           EGN_Mt090430 20090702
          Length = 284

 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/66 (74%), Positives = 58/66 (87%)

Query: 181 GRVAAVPLLVSTFYLDSWWGRTATTSIFIAAAVTDWLDGYLARKMRLGSAFGAFLDPVAD 240
           GRVAAVPLLV+TFY+D W G  ATT+IF+AA+VTDWLDGY+ARKM L S FGAFLDPVAD
Sbjct: 99  GRVAAVPLLVATFYMDGWRGTAATTTIFVAASVTDWLDGYIARKMNLKSQFGAFLDPVAD 158

Query: 241 KVCVSS 246
           K+ V++
Sbjct: 159 KLMVAA 164


>IMGA|Medtr7g005180.1 CDP-alcohol phosphatidyltransferase
           chr07_pseudomolecule_IMGAG_V3 236647-239273 E
           EGN_Mt090430 20090702
          Length = 166

 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/91 (64%), Positives = 72/91 (79%), Gaps = 3/91 (3%)

Query: 159 QNHHKQED---SRSKLLTLPTILTLGRVAAVPLLVSTFYLDSWWGRTATTSIFIAAAVTD 215
           +N H+      S SKLLTLPTILTL RVA++P LV+TFY+D W G   TT IF AAA+TD
Sbjct: 11  KNDHRASSMPSSHSKLLTLPTILTLARVASIPFLVATFYMDGWQGTAVTTCIFTAAAITD 70

Query: 216 WLDGYLARKMRLGSAFGAFLDPVADKVCVSS 246
           WLDGY+ARKM+L S+FGAFLDPVADK+ V++
Sbjct: 71  WLDGYIARKMKLKSSFGAFLDPVADKLMVAA 101