Jatropha Genome Database

JcCB0143591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0143591.10 - phase: 0 /partial
         (230 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g109110.1 Carbohydrate kinase, PfkB; Acyl-CoA dehydro...    73   1e-13

>IMGA|Medtr4g109110.1 Carbohydrate kinase, PfkB; Acyl-CoA
           dehydrogenase C-terminal-like;
           chr04_pseudomolecule_IMGAG_V3 24329162-24322582 E
           EGN_Mt090430 20090702
          Length = 678

 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 65/124 (52%), Gaps = 12/124 (9%)

Query: 78  REIQEKVFAYFNSRPELQTPVEIAKDDYRELCWRQLLGLVREAGIRPFRYVADDP---VK 134
           RE+  +VF      P+    +E      RE+  +++  L+     R +    D P   ++
Sbjct: 82  REVDGRVFV----NPDYNQSME----QQREMTMKRIAYLLDRGVFRGW-LTGDGPQEELR 132

Query: 135 YFAILEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHREKYFDGIDNLEYPGCFAMTEL 194
             A+ E +G  D SL +K+GV   LWGG+V  LGTK+H +K+    +N +  GCFAM+EL
Sbjct: 133 KLALHEVIGMYDHSLAVKLGVHIFLWGGAVKFLGTKRHHDKWLRATENYDIKGCFAMSEL 192

Query: 195 HHGK 198
            HG 
Sbjct: 193 GHGS 196