Jatropha Genome Database

JcCB0143121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0143121.10 - phase: 0 /pseudo
         (319 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g118010.1 Helix-loop-helix DNA-binding chr07_pseudomo...    82   3e-16

>IMGA|Medtr7g118010.1 Helix-loop-helix DNA-binding
           chr07_pseudomolecule_IMGAG_V3 27689442-27693888 E
           EGN_Mt090430 20090702
          Length = 521

 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/102 (46%), Positives = 55/102 (53%), Gaps = 19/102 (18%)

Query: 22  FTRPKKSITSEDEIMELLWQNGQVVVQSQTQMSLKKLP---HSKYDDAVLPVEASNTREI 78
             RPKK I ++DEIMELLWQNGQVV Q       KK P    +       PVE  N    
Sbjct: 18  LPRPKKPIIADDEIMELLWQNGQVVTQRPNHRHAKKPPSCQETTRGGGASPVENYN---- 73

Query: 79  RSTQEHHQQQQHLFMQEDEMASWLHYPLNDTNFDQDFCADLL 120
                     Q+LFMQE+EMASWLHY  +D+ FD+ F  D L
Sbjct: 74  ----------QYLFMQENEMASWLHY--DDSPFDRTFSTDYL 103