Jatropha Genome Database

JcCB0142841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0142841.10 + phase: 2 /pseudo/partial
         (139 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g117560.1 2Fe-2S ferredoxin, iron-sulfur binding site...   197   1e-51
IMGA|Medtr5g094490.1 2Fe-2S ferredoxin, iron-sulfur binding site...    59   6e-10

>IMGA|Medtr2g117560.1 2Fe-2S ferredoxin, iron-sulfur binding site;
            Xanthine dehydrogenase, small subunit; Carbon-monoxide
            dehydrogenase, large subunit
            chr02_pseudomolecule_IMGAG_V3 27646570-27659065 E
            EGN_Mt090430 20090702
          Length = 1358

 Score =  197 bits (501), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 93/109 (85%), Positives = 99/109 (90%)

Query: 31   GWLYTSGPGAYKIPSINDVPFKFKVSLLKGHPNVKAIHSSKAVGEPPFFLASAVFFAIKD 90
            GWL T GPGAYKIPSINDVP KF VSLLKGHPNVKAIHSSKAVGEPPFFLASAVFFAIKD
Sbjct: 1250 GWLNTCGPGAYKIPSINDVPLKFNVSLLKGHPNVKAIHSSKAVGEPPFFLASAVFFAIKD 1309

Query: 91   AIKAARAEVGHHEWFPLDNPATPERIRMACLDEFTAPFINSDYRPKLSV 139
            AI+AARAE G  +WF LD+PATPERIRMACLDEFT+ F+NSD+ PKLSV
Sbjct: 1310 AIRAARAETGCTDWFTLDSPATPERIRMACLDEFTSSFLNSDFHPKLSV 1358


>IMGA|Medtr5g094490.1 2Fe-2S ferredoxin, iron-sulfur binding site;
            Xanthine dehydrogenase, small subunit; Carbon-monoxide
            dehydrogenase, large subunit
            chr05_pseudomolecule_IMGAG_V3 37388580-37380627 H
            EGN_Mt090430 20090702
          Length = 1356

 Score = 59.3 bits (142), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 2/89 (2%)

Query: 30   QGWLYTSGPGAYKIPSINDVPFKFKVSLLKGHPNVKAIHSSKAVGEPPFFLASAVFFAIK 89
             G     G   YKIP+I+ +P +F V +     N   + SSKA GEPP  LA++V  A +
Sbjct: 1243 NGLSLADGTWNYKIPTIDTIPQQFNVEIFNSGHNQHRVLSSKASGEPPLLLAASVHCATR 1302

Query: 90   DAIKAARAEVGHHEWFPLDNPATPERIRM 118
             AIK AR ++    W  LD P +   +R+
Sbjct: 1303 AAIKEARKQL--LSWRNLDEPDSTFELRV 1329