Jatropha Genome Database

JcCB0139821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0139821.10 + phase: 0 /pseudo/partial
         (353 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g135990.1 hypothetical protein chr03_pseudomolecule_I...    62   4e-10

>IMGA|Medtr3g135990.1 hypothetical protein
           chr03_pseudomolecule_IMGAG_V3 34174220-34170227 E
           EGN_Mt090430 20090702
          Length = 118

 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 78  YLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEI--------ANGDEQVKADAIRI 129
           YL RSGA  F+LPLS G  SSSVA IVGCMCQL VKEI        AN  E    D + I
Sbjct: 30  YLLRSGAYAFMLPLSDGVYSSSVAEIVGCMCQLAVKEIKSLVLRLEANDIEVFNEDIVAI 89

Query: 130 GRYTNGQFP 138
             + N  F 
Sbjct: 90  FGFENFDFK 98