Jatropha Genome Database

JcCB0138801.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0138801.10 + phase: 0 /partial
         (151 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g103080.1 Phosphoribosyltransferase chr08_pseudomolec...   164   2e-41

>IMGA|Medtr8g103080.1 Phosphoribosyltransferase
           chr08_pseudomolecule_IMGAG_V3 22890648-22894795 E
           EGN_Mt090430 20090702
          Length = 396

 Score =  164 bits (414), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 77/102 (75%), Positives = 90/102 (88%), Gaps = 3/102 (2%)

Query: 50  SVKCDMAEPVNVGNGKPSIPILNERTLPKFLESARMEKSVNRNSTRLKLFSGSANPALSQ 109
           +VKCDM+E  NV NGKP +P++NE+TLPKF+ES   EK+V+RN  +LKLFSG+ANPALSQ
Sbjct: 36  TVKCDMSEASNVVNGKPIVPVINEQTLPKFMES---EKTVSRNGNKLKLFSGTANPALSQ 92

Query: 110 EIAWYMGLELGKINIKRFADGEIYVQLQESVRGCDVYLLQPT 151
           EIA YMGLELGKI  KRFADGEIYVQLQESVRGC+VYL+QPT
Sbjct: 93  EIARYMGLELGKITTKRFADGEIYVQLQESVRGCNVYLIQPT 134