Jatropha Genome Database
- JcCB0137811.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0137811.20 + phase: 1 /TE/partial
(481 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidy... 105 5e-23
IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H... 105 7e-23
IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl t... 97 2e-20
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 97 2e-20
IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidy... 89 6e-18
IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidy... 84 1e-16
IMGA|Medtr8g128710.1 Polynucleotidyl transferase, Ribonuclease H... 83 3e-16
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 80 3e-15
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 79 3e-15
IMGA|Medtr3g044280.1 hypothetical retrotransposon, related chr03... 77 3e-14
IMGA|Medtr5g082230.1 hypothetical retrotransposon, related chr05... 77 3e-14
IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H... 75 1e-13
IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H... 72 7e-13
IMGA|Medtr3g058920.1 Polynucleotidyl transferase, Ribonuclease H... 70 2e-12
IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidy... 69 6e-12
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 68 9e-12
IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl tra... 67 2e-11
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 62 8e-10
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 60 3e-09
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 59 5e-09
IMGA|Medtr1g076760.1 hypothetical protein chr01_pseudomolecule_I... 55 5e-08
IMGA|Medtr8g128700.1 Integrase, catalytic region chr08_pseudomol... 50 2e-06
IMGA|Medtr4g019480.1 Integrase, catalytic region chr04_pseudomol... 50 2e-06
>IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 9732923-9735744 H
EGN_Mt090430 20090702
Length = 920
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 125/254 (49%), Gaps = 15/254 (5%)
Query: 61 LWHKRLRHMSKKTLAR-KNVLPGLDEVHLDKCPDCMAGKQNRVAFKIIPPSRMKKVLNLI 119
LWH RL H+S L R + P + C C + ++ FK+ ++ LI
Sbjct: 534 LWHFRLGHLSNDRLLRMQQHFPCIKVDSNSVCDICHYSRHKKLPFKL-SMNKASHCYELI 592
Query: 120 HSDLCGPLMMX-YGGNRYFVTFIDDHSRKTWVYTLKSSKPGXETVRQEAEVYQDRXWWRI 178
H D+ GP+ G++YF+T +DD+SR TW+ K+ ++V+ +++ ++
Sbjct: 593 HFDIWGPISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNIENQFNCKV 652
Query: 179 ---------HWAIXCFLQRAWHSHQTTPPKTPQLNGLAERMNRTLMEGVRYLLSHAKLFK 229
+ + F HQT+ +TPQ NG ER ++ ++ R LL +KL K
Sbjct: 653 KTVRTDNGPEFLMPDFYSSKGIEHQTSCVETPQQNGRVERKHQHILNVARALLFQSKLPK 712
Query: 230 RFWGEALLTAVY---RSPCFPLQYDTPERVWSGKDVSYDHLRVFGCKAFVHVPKDERSKL 286
FW ++L A+Y R P LQ +P + G D ++ +VFGC ++ + R+K
Sbjct: 713 IFWSYSVLHAIYIINRIPTPLLQNKSPYFLRYGHDPDLNNFKVFGCLSYASTLHNHRTKF 772
Query: 287 NVKTRQCVFIGYGQ 300
+ + ++CVF+GY Q
Sbjct: 773 DSRAQKCVFLGYKQ 786
>IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 31006465-31009370 H
EGN_Mt090430 20090702
Length = 883
Score = 105 bits (261), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 125/254 (49%), Gaps = 15/254 (5%)
Query: 61 LWHKRLRHMSKKTLAR-KNVLPGLDEVHLDKCPDCMAGKQNRVAFKIIPPSRMKKVLNLI 119
LWH RL H+S L R + P + C C + ++ FK+ ++ LI
Sbjct: 464 LWHFRLGHLSNDRLLRMQQHFPCIKVDSNSVCDICHYSRHKKLPFKL-SMNKASHCYELI 522
Query: 120 HSDLCGPLMMX-YGGNRYFVTFIDDHSRKTWVYTLKSSKPGXETVRQEAEVYQDRXWWRI 178
H D+ GP+ G++YF+T +DD+SR TW+ K+ ++V+ +++ ++
Sbjct: 523 HFDIWGPISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNIENQFNCKV 582
Query: 179 ---------HWAIXCFLQRAWHSHQTTPPKTPQLNGLAERMNRTLMEGVRYLLSHAKLFK 229
+ + F HQT+ +TPQ NG ER ++ ++ R LL +KL K
Sbjct: 583 KTVRTDNGPEFLMPDFYSSKGIEHQTSCVETPQQNGRVERKHQHILNVARALLFQSKLPK 642
Query: 230 RFWGEALLTAVY---RSPCFPLQYDTPERVWSGKDVSYDHLRVFGCKAFVHVPKDERSKL 286
FW ++L A+Y R P LQ +P + G D ++ +VFGC ++ + R+K
Sbjct: 643 VFWSYSVLHAIYIINRIPTPLLQNKSPYFLRYGHDPDLNNFKVFGCLSYASTLHNHRTKF 702
Query: 287 NVKTRQCVFIGYGQ 300
+ + ++CVF+GY Q
Sbjct: 703 DSRAQKCVFLGYKQ 716
>IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235005.1 3152-790 H
EGN_Mt090430 20090702
Length = 772
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 120/254 (47%), Gaps = 19/254 (7%)
Query: 61 LWHKRLRHMSKKTLARKNVL-PGLDEVHLDKCPDCMAGKQNRVAFKIIPPSRMKKVLNLI 119
LWH RL H+S + L+ + L P + + C C + ++ F S L+
Sbjct: 511 LWHFRLGHLSNQRLSTMSRLYPSIIVDNKAACDICHFARHKKLPFPH-SSSHANSKFQLL 569
Query: 120 HSDLCGPLMMXY-GGNRYFVTFIDDHSRKTWVYTLKSSKPGXETVRQEAEVYQDRXWWRI 178
H D+ GPL + Y G++YF+T +DDH+R W+ LKS ++ + +++ + I
Sbjct: 570 HFDIWGPLAINYVHGHKYFLTIVDDHTRFLWIILLKSKAEVPIHIKNFIALIENQ--FHI 627
Query: 179 HWAIXC------FLQRAWHS-----HQTTPPKTPQLNGLAERMNRTLMEGVRYLLSHAKL 227
I FL +++ HQ + +TPQ NG ER ++ ++ R LL +KL
Sbjct: 628 TPKIIRTDNGSEFLLHDFYASKGILHQRSCVETPQQNGRVERKHQHILNIGRALLYQSKL 687
Query: 228 FKRFWGEALLTAVY---RSPCFPLQYDTPERVWSGKDVSYDHLRVFGCKAFVHVPKDERS 284
FW A L AV+ R P LQ +P ++ +VFGC + + R+
Sbjct: 688 PLSFWSYAFLHAVFLINRVPTLVLQNQSPYQLLYDSSPDVTTFKVFGCLCYASSLQSHRT 747
Query: 285 KLNVKTRQCVFIGY 298
KL + R+ VF+GY
Sbjct: 748 KLETRARKSVFLGY 761
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 124/262 (47%), Gaps = 22/262 (8%)
Query: 61 LWHKRLRHMSKKTLARKNVL-PGLDEVHLDKCPDCMAGKQNRVAFKIIPPSRMKKVLNLI 119
LWH RL H+S + L+ + L P + + C C + ++ F S L+
Sbjct: 511 LWHFRLGHLSNQRLSTMSRLYPSIIVDNKAACDICHFARHKKLPFPH-SSSHANSKFQLL 569
Query: 120 HSDLCGPLMMXY-GGNRYFVTFIDDHSRKTWVYTLKSSKPGXETVRQEAEVYQDRXWWRI 178
H D+ GPL + Y G++YF+T +DDH+R W+ LKS ++ + +++ + I
Sbjct: 570 HFDIWGPLAINYVHGHKYFLTIVDDHTRFLWIILLKSKAEVPIHIKNFIALIENQ--FHI 627
Query: 179 HWAIX------CFLQRAWHS-----HQTTPPKTPQLNGLAERMNRTLMEGVRYLLSHAKL 227
I FL +++ HQ + +TPQ NG ER ++ ++ R LL +KL
Sbjct: 628 TPKIIRTDNGSEFLLHDFYASKGILHQRSCVETPQQNGRVERKHQHILNIGRALLYQSKL 687
Query: 228 FKRFWGEALLTAVY---RSPCFPLQYDTPERVWSGKDVSYDHLRVFGCKAFVHVPKDERS 284
FW A L AV+ R P LQ +P ++ +VFGC + + R+
Sbjct: 688 PLSFWSYAFLHAVFLINRVPTLVLQNQSPYQLLYDSSPDVTTFKVFGCLCYASSLQSHRT 747
Query: 285 KLNVKTRQCVFIGYGQDQCGYK 306
KL + R+ VF+GY + G+K
Sbjct: 748 KLETRARKSVFLGY---KSGFK 766
>IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr02_pseudomolecule_IMGAG_V3 24496395-24493968 H
EGN_Mt090430 20090702
Length = 790
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 110/252 (43%), Gaps = 15/252 (5%)
Query: 61 LWHKRLRHMSKKTLARKNVLPGLDEVHL-DKCPDCMAGKQNRVAFKIIPPSRMKKVLNLI 119
LWH RL H+S + N + V C C +Q + F I K +L+
Sbjct: 536 LWHLRLGHLSHDRMICMNKMYSYVPVSPHTACDVCQMCRQKILPFPI-SSRNAKTAFDLV 594
Query: 120 HSDLCGPL-MMXYGGNRYFVTFIDDHSRKTWVYTLKSSKPGXETVRQEAEVYQDRXWWRI 178
H D+ GP G++YF+T +DD +R W+ LK+ V+ + + + +I
Sbjct: 595 HFDIWGPFSTTSVHGHKYFLTILDDCTRHVWIVMLKNKSEASYQVKNFVSMVERQFERKI 654
Query: 179 ---------HWAIXCFLQRAWHSHQTTPPKTPQLNGLAERMNRTLMEGVRYLLSHAKLFK 229
+ + F + HQ + TPQ NG ER ++ ++ R L+ +KL K
Sbjct: 655 KMIRSDNGPEFMLREFYDKKGIIHQRSCVYTPQQNGRVERRHQHILNISRALMFQSKLPK 714
Query: 230 RFWGEALLTAVY---RSPCFPLQYDTPERVWSGKDVSYDHLRVFGCKAFVHVPKDERSKL 286
FW A+L AVY R P L + V + L+VFGC ++ R K
Sbjct: 715 NFWSYAVLHAVYLINRIPTKILNNKSSYEVLYNEVPDLSSLKVFGCLSYASTLPVNRYKF 774
Query: 287 NVKTRQCVFIGY 298
+ K R+C F+G+
Sbjct: 775 DPKARKCAFLGF 786
>IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 12039092-12042104 H
EGN_Mt090430 20090702
Length = 945
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 119/263 (45%), Gaps = 23/263 (8%)
Query: 61 LWHKRLRHMSKKTLARKNVL-PGLD-EVHLDKCPDCMAGKQNRVAF-KIIPPSRMKKVLN 117
LWH RL H+S K L + L P L +VH C C KQ ++ F I + +K
Sbjct: 491 LWHFRLGHVSPKRLIHMSQLYPTLTVDVHA-TCDICHFAKQKKLPFSNSISVASIK--FE 547
Query: 118 LIHSDLCGPLMMXYGGN-RYFVTFIDDHSRKTWVYTLKSSKPGXETVRQEAEVYQDRXWW 176
L+H D+ GPL + N RYF+T +DD+SR W+ LKS + V+ + Q + +
Sbjct: 548 LLHFDIWGPLSITSIHNHRYFLTILDDYSRYVWIVLLKSKSEVSQHVKNFINLIQTQ--Y 605
Query: 177 RI-----------HWAIXCFLQRAWHSHQTTPPKTPQLNGLAERMNRTLMEGVRYLLSHA 225
I + + F H + +TPQ NG ER ++ ++ R LL +
Sbjct: 606 NITPKTVRSDNGPEFLLHSFYASKGIVHHRSCVETPQQNGRVERKHQHILNVGRALLYQS 665
Query: 226 KLFKRFWGEALLTAVY---RSPCFPLQYDTPERVWSGKDVSYDHLRVFGCKAFVHVPKDE 282
KL +W ALL A + R L +P ++ + +VFG +
Sbjct: 666 KLPVSYWSYALLHATFIINRVTSPTLHNKSPYQLLHDTIPAEHIFKVFGSLCYSTTLHSH 725
Query: 283 RSKLNVKTRQCVFIGYGQDQCGY 305
R+KL+ + R+ VF+GY GY
Sbjct: 726 RTKLSARARKSVFLGYTVGFKGY 748
>IMGA|Medtr8g128710.1 Polynucleotidyl transferase, Ribonuclease H
fold chr08_pseudomolecule_IMGAG_V3 30179997-30181475 E
EGN_Mt090430 20090702
Length = 98
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 55/92 (59%), Gaps = 5/92 (5%)
Query: 199 KTPQLNGLAERMNRTLMEGVRYLLSHAKLFKRFWGEALLTAVY---RSPCFPLQYDTPER 255
TPQ NG+AERMN+TL+E RY+LS+ L + FW EA+ T Y R P + T
Sbjct: 4 NTPQHNGVAERMNQTLLEKARYMLSNVGLTRTFWAEAVNTTCYLVNRGPHTSINLKTLYE 63
Query: 256 VWSGKDVSYDHLRVFGCKAFVHVP--KDERSK 285
+W GK V Y +LRVFGC + HV K ER K
Sbjct: 64 LWPGKSVDYSNLRVFGCTVYYHVNEWKLERRK 95
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 114/259 (44%), Gaps = 29/259 (11%)
Query: 64 KRLRHMSKKTLARKNVLPGLDEVHLDKCPDCMAGKQNRVAFKIIPPSRMKKVLNLIHSDL 123
KRL HMS ++ P L + C C KQ +++F S L+H D+
Sbjct: 494 KRLNHMS-------HLYPTLTVDNHATCDICQFAKQKKLSFPT-SVSVASSKFELLHFDI 545
Query: 124 CGPLMMXYGGN-RYFVTFIDDHSRKTWVYTLKSSKPGXETVRQEAEVYQDRXWWRIHWAI 182
GPL + N RYF+T +DD+S W+ LKS V Q + + + + H
Sbjct: 546 WGPLAVTSIHNHRYFLTILDDYSIFFWIVLLKSKY----EVSQHVKNFINLIHTQYHITP 601
Query: 183 XC--------FLQRAWHS-----HQTTPPKTPQLNGLAERMNRTLMEGVRYLLSHAKLFK 229
FL ++++ H + +TPQ NG ER ++ ++ R LL +KL
Sbjct: 602 KVVRSDNGPEFLLNSFYASKGIVHHKSCVETPQQNGRVERKHQHILNVGRALLFQSKLPS 661
Query: 230 RFWGEALLTAVY---RSPCFPLQYDTPERVWSGKDVSYDHLRVFGCKAFVHVPKDERSKL 286
+W ALL A++ R L +P ++ G +VFG + + R+KL
Sbjct: 662 SYWSYALLHAIFIINRVTSPTLHNKSPYQLLHGTIPDVQTFKVFGSLCYSTTLQSHRTKL 721
Query: 287 NVKTRQCVFIGYGQDQCGY 305
+ + R+ VF+GY GY
Sbjct: 722 SARARKTVFLGYAVGYKGY 740
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 114/262 (43%), Gaps = 30/262 (11%)
Query: 58 TVELWHKRLRHMSKKTLAR-KNVLPGLDEVHLDKCPDCMAGKQNRVAFKIIPPSRMKKVL 116
LWH RL H+S + + + ++ P + + D C C KQ + F S
Sbjct: 491 VAALWHFRLGHLSNQRMIKMSHLYPSIVHNNRDVCDICHFSKQKHLPFSS-SLSHASTNF 549
Query: 117 NLIHSDLCGPLMMX-YGGNRYFVTFIDDHSRKTWVYTLKSSKPGXETVRQ-----EAEVY 170
L+H D+ GP+ + G+RYF+T +DDHSR W+ LKS V+ + +
Sbjct: 550 ELLHFDIWGPISISSVHGHRYFLTILDDHSRFLWIILLKSKSEVSLHVKNFILMIRTQFH 609
Query: 171 QDRXWWRIHWAIXCFLQRAWHS----HQTTPPKTPQLNGLAERMNRTLMEGVRYLLSHAK 226
+ R L + S HQ + +TPQ NG ER ++ ++ R LL +K
Sbjct: 610 VTPKYVRSDNGPEFLLNDFYSSHGIIHQKSCVETPQQNGRVERKHQHILNVGRALLYQSK 669
Query: 227 LFKRFWGEALLTAVY---RSPCFPLQYDTPERVWSGKDVSYDHLRVFGCKAFVHVPKDER 283
L FW A+L AV+ R P L +P V K +++F +
Sbjct: 670 LPPSFWSYAILHAVFLINRVPTHVLHNQSPYHVLFHK---LPDIQLF------------K 714
Query: 284 SKLNVKTRQCVFIGYGQDQCGY 305
SKL + R+ +F+GY GY
Sbjct: 715 SKLQPRARKSLFLGYKSGYKGY 736
>IMGA|Medtr3g044280.1 hypothetical retrotransposon, related
chr03_pseudomolecule_IMGAG_V3 12337068-12337358 H
EGN_Mt090430 20090702
Length = 96
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 60/97 (61%), Gaps = 5/97 (5%)
Query: 52 VVENDSTVELWHKRLRHMSKKT---LARKNVLPGLDEVHLDKCPDCMAGKQNRVAFKIIP 108
+VE+ VELWHKRL HM +K L + NVL + HL KC C+ K+++V+F+
Sbjct: 1 MVESTEKVELWHKRLCHMIEKDMVKLCKSNVLSDMSNPHLKKCDHCIVEKKSKVSFEFHS 60
Query: 109 PSRMKKVLNLIHSDLCGPLMM-XYGGNRYFVTFIDDH 144
P R +L+L+H L GP+ GG+ YF++FIDDH
Sbjct: 61 PKR-PTILDLVHCHLFGPMKTGTIGGSTYFLSFIDDH 96
>IMGA|Medtr5g082230.1 hypothetical retrotransposon, related
chr05_pseudomolecule_IMGAG_V3 30910887-30910597 H
EGN_Mt090430 20090702
Length = 96
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 60/97 (61%), Gaps = 5/97 (5%)
Query: 52 VVENDSTVELWHKRLRHMSKKT---LARKNVLPGLDEVHLDKCPDCMAGKQNRVAFKIIP 108
+VE+ VELWHKRL HM +K L + NVL + HL KC C+ K+++V+F+
Sbjct: 1 MVESTEKVELWHKRLCHMIEKDMVKLCKSNVLSDMSNPHLKKCDHCIVEKKSKVSFEFHS 60
Query: 109 PSRMKKVLNLIHSDLCGPLMM-XYGGNRYFVTFIDDH 144
P R +L+L+H L GP+ GG+ YF++FIDDH
Sbjct: 61 PKR-PTILDLVHCHLFGPMKTGTIGGSTYFLSFIDDH 96
>IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 41676281-41681462 E
EGN_Mt090430 20090702
Length = 479
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 102/237 (43%), Gaps = 32/237 (13%)
Query: 91 CPDCMAGKQNRVAFKIIPPSRMKKVLNLIHSDLCGPLMMX-YGGNRYFVTFIDDHSRKTW 149
C C + ++ F K L+H D+ GPL + G++YF+T +DDH+R W
Sbjct: 16 CDVCHFARHKKLPFSHSSSHASSK-FQLLHFDIWGPLAINSIHGHKYFLTIVDDHTRFLW 74
Query: 150 VYTLKSSKPGXETVRQ-----EAEVYQDRXWWRIHWAIXCFLQRAWHS----HQTTPPKT 200
+ LK+ ++ E + + R L + S HQ++ +T
Sbjct: 75 IILLKTKAEVPMHIKNFIVMIENQFHVTPKIIRTDNGSEFLLHEFYASKGILHQSSCVET 134
Query: 201 PQLNGLAERMNRTLMEGVRYLLSHAKLFKRFWGEALLTAVYR------------SPCFPL 248
PQ NG ER ++ ++ R LL +KL FW A L AV+ SP + L
Sbjct: 135 PQQNGRVERKHQHILNIGRALLYQSKLPLSFWSYAFLHAVFLINRITTPVLHNFSP-YHL 193
Query: 249 QYDTPERVWSGKDVSYDHLRVFGCKAFVHVPKDERSKLNVKTRQCVFIGYGQDQCGY 305
YD+P + + +VFGC + + +KL + R+ VF+GY GY
Sbjct: 194 LYDSPPDITT--------FKVFGCLCYASSLQSHITKLETRARKSVFLGYKLGFKGY 242
>IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H
fold chr02_pseudomolecule_IMGAG_V3 10761249-10763836 E
EGN_Mt090430 20090702
Length = 772
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 107/250 (42%), Gaps = 35/250 (14%)
Query: 61 LWHKRLRHMSKKTLARKNVLPGLDEVHLDKCPDCMAGKQNRVAFKIIPPSRMKKVLNLIH 120
+WH RL H+S + L+ + L + +D +A + L+H
Sbjct: 540 IWHFRLGHLSNQRLSMMHSL--YSSITIDNKAYSIASSK----------------FELLH 581
Query: 121 SDLCGPL-MMXYGGNRYFVTFIDDHSRKTWVYTLKSSKPGXETVRQEAEVYQDRXWWRI- 178
D+ GPL + G++YF+T +DD SR WV LK+ V+ + ++I
Sbjct: 582 FDIWGPLSVTSVHGHKYFLTIVDDFSRFLWVILLKNKSEVSNHVKNFVVLIHTH--YQIT 639
Query: 179 ----------HWAIXCFLQRAWHSHQTTPPKTPQLNGLAERMNRTLMEGVRYLLSHAKLF 228
+ I F HQ + +TPQ NG ER ++ ++ R LL +KL
Sbjct: 640 PKYIRSDNGPEFLIPEFYASKGIIHQKSCVETPQQNGRVERKHQHILNVARALLFQSKLP 699
Query: 229 KRFWGEALLTAVY---RSPCFPLQYDTPERVWSGKDVSYDHLRVFGCKAFVHVPKDERSK 285
FW A++ AV+ + P + +P ++ + +VFGC F +RSK
Sbjct: 700 NFFWSYAVIHAVFLINKVPTPLFKQKSPYQLLYDSLPDINSFKVFGCLCFASTLLAQRSK 759
Query: 286 LNVKTRQCVF 295
L + R+ +F
Sbjct: 760 LQSRARKSIF 769
>IMGA|Medtr3g058920.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13083640-13084056 H
EGN_Mt090430 20090702
Length = 138
Score = 70.1 bits (170), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 91 CPDCMAGKQNRVAFKIIPPSRMKKVLNLIHSDLCGPLMM-XYGGNRYFVTFIDDHSRKTW 149
C C+ GK +R AFK R K VLN++HSD+ GP+ + Y GNRYF+TF+D++S+ W
Sbjct: 15 CNICLVGKHSRSAFKSELKMRAKHVLNVVHSDIYGPIKVPTYSGNRYFITFVDEYSKMLW 74
Query: 150 VYTLK 154
+Y +K
Sbjct: 75 LYLIK 79
>IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 39272474-39269703 H
EGN_Mt090430 20090702
Length = 847
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 114/261 (43%), Gaps = 42/261 (16%)
Query: 61 LWHKRLRHMSKKTLARKNVLPGLDEVHLDKCPDCMAGKQNRVAFKIIPPSRMKKVLNLIH 120
L H+R+ MS +L V + V C C KQ + F I S L+H
Sbjct: 474 LSHQRMNMMS--SLYSNIVSDNKNSV----CDICHFAKQKHLPFSI-STSHATSNFELLH 526
Query: 121 SDLCGPLMMX-YGGNRYFVTFIDDHSRKTWVYTLKSSKPGXETVRQEAEVYQDRXWWRIH 179
D+ GPL + G++YF+T +DDHSR W+ +LK+ V+ ++ Q + H
Sbjct: 527 LDIWGPLSISSIHGHKYFLTIVDDHSRFLWIISLKTKSGVSHHVKSFIKMVQTQ----FH 582
Query: 180 WAIXC--------FLQRAWHS-----HQTTPPKTPQLNGLAERMNRTLMEGVRYLLSHAK 226
C FL +++ HQ + +TPQ NG ER + ++ R LL +K
Sbjct: 583 VTPKCIRSDNGPEFLILSFYESLGILHQKSCVETPQQNGRVERKHHHILNVGRALLYQSK 642
Query: 227 LFKRFWGEALLTAVYRSPCFPLQYDTPERVWSGKDVSYD-HLRVFGCKAFVHVPKDERSK 285
L +W ALL AV+ L P + G+ Y H + F +++
Sbjct: 643 LPASYWSYALLHAVF------LINRKPTPLLEGQSPYYALHHKFPDIDTF-------KNQ 689
Query: 286 LNVKTRQCVFIGYGQDQCGYK 306
+ + R+ VF+GY + GYK
Sbjct: 690 ASTRARKTVFLGY---KSGYK 707
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H
fold chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 193 HQTTPPKTPQLNGLAERMNRTLMEGVRYLLSHAKLFKRFWGEALLTAVY---RSPCFPLQ 249
H + +TPQ NG ER ++ ++ VR LL +KL FW A+L AV+ R L
Sbjct: 482 HHKSCVETPQQNGRVERKHQHILNVVRALLFQSKLPPTFWSYAVLHAVFLINRVSTPLLH 541
Query: 250 YDTPERVWSGKDVSYDHLRVFGCKAFVHVPKDERSKLNVKTRQCVFIGYGQDQCGYK 306
+P V K S D +VFGC + ++ R+KL + R+ +F+GY Q GYK
Sbjct: 542 NQSPYLVLHNKLPSLDLFKVFGCLCYASTLQNHRTKLQSRARKSIFLGY---QSGYK 595
>IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 10143838-10146452 H
EGN_Mt090430 20090702
Length = 753
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 106/256 (41%), Gaps = 39/256 (15%)
Query: 58 TVELWHKRLRHMSKKTLARKNVLPGLDEVHLDK---CPDCMAGKQNRVAFKIIPPSRMKK 114
+ LWH RL H+S + L++ + L ++H+D C C KQ ++ + S
Sbjct: 441 STALWHFRLGHLSNQRLSQMHHL--YPDIHVDNKFICDICHFAKQRKLPYNS-STSIASS 497
Query: 115 VLNLIHSDLCGPLM-MXYGGNRYFVTFIDDHSRKTWVYTLKSSKPGXETVRQEAEVYQDR 173
L++ D+ GPL + G RYF+T +DDHSR W K+ ++ + Q++
Sbjct: 498 NFELLYLDIWGPLAKVSIHGQRYFLTIVDDHSRFLWTILFKNKSEVPSHIQHFIYLIQNK 557
Query: 174 XWWRIHWAIXCFLQRAWHSHQTTPPKTPQLNGLAERMNRTLMEGVRYLLSHAKLFKRFWG 233
H+ TP NG ++ + S + +R
Sbjct: 558 -------------------HKVTPKIIRSDNGHVFLLS-------AFYASQGIIHQRSCV 591
Query: 234 EALLTAVY---RSPCFPLQYDTPERVWSGKDVSYDHLRVFGCKAFVHVPKDERSKLNVKT 290
E V+ R P L+ +P +V + +VFGC + + R+KL +
Sbjct: 592 ETPQHNVFLINRVPTLVLENKSPYQVLYKTLPDINSFKVFGCLCYASTLQSHRTKLQSRA 651
Query: 291 RQCVFIGYGQDQCGYK 306
R+ VF+GY + GYK
Sbjct: 652 RKSVFLGY---KSGYK 664
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 218 VRYLLSHAKLFKRFWGEALLTAVY---RSPCFPLQYDTPERVWSGKDVSYDHLRVFGCKA 274
VR +L K+ FWG A+ TA Y R P ++ PE +WS + S +L+VFG
Sbjct: 2 VRSMLKEKKIPHEFWGAAVNTATYILNRCPTKKMKDKVPEEIWSRRKPSISNLKVFGSIF 61
Query: 275 FVHVPKDERSKLNVKTRQCVFIGY 298
+ HVP R KL KT + +GY
Sbjct: 62 YKHVPDSRRKKLEDKTEAMILVGY 85
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 193 HQTTPPKTPQLNGLAERMNRTLMEGVRYLLSHAKLFKRFWGEALLTAVY---RSPCFPLQ 249
HQ + +TPQ NG ER ++ ++ R LL +KL FW A L AV+ R P L
Sbjct: 34 HQRSCVETPQQNGRVERKHQHILNIGRALLYQSKLPLSFWSYAFLHAVFLINRIPTPVLH 93
Query: 250 YDTPERVWSGKDVSYDHLRVFGCKAFVHVPKDERSKLNVKTRQCVFIGYGQDQCGY 305
+P + +VFGC + + R+KL + R+ VF+GY GY
Sbjct: 94 NFSPYHLLYDSPPDITTFKVFGCLCYASSLQSHRTKLETRARKSVFLGYKLGFKGY 149
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H
fold chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 100/250 (40%), Gaps = 33/250 (13%)
Query: 61 LWHKRLRHMSKKTLARKNVL-PGLDEVHLDKCPDCMAGKQNRVAFKIIPPSRMKKVLNLI 119
LWH RL H+SK+ L ++L P + + C C K + F SR ++ L
Sbjct: 535 LWHFRLGHLSKQRLQTLSLLYPSIKIDNKAICDLCHFAKHKHLPFTSNDHSRFLWIILLK 594
Query: 120 HSDLCGPLMMXYGGNRYFVTFIDDHSRKTWVYTLKSSKPGXETVRQEAEVYQDRXWWRIH 179
+ + F+T I +H T + + P + + H
Sbjct: 595 TKAEVSTHV------KNFITMIKNHFHTTPKFIRTDNGPE----------FMLSTLYSSH 638
Query: 180 WAIXCFLQRAWHSHQTTPPKTPQLNGLAERMNRTLMEGVRYLLSHAKLFKRFWGEALLTA 239
I HQ + +TPQ NG ER ++ ++ R LL +KL +W A+ A
Sbjct: 639 GII----------HQKSCVETPQQNGRVERKHQHILNVGRALLYQSKLPPAYWCYAIQHA 688
Query: 240 VY---RSPCFPLQYDTPERVWSGKDVSYDHLRVFGCKAFVHVPKDERSKLNVKTRQCVFI 296
V+ R P L +P V K +VFGC + + +KL + R+ +FI
Sbjct: 689 VFLINRVPTPTLNNQSPYFVLHHKLPDSSLFKVFGCLCYASTLQSHTTKLKHRARKSIFI 748
Query: 297 GYGQDQCGYK 306
GY Q GYK
Sbjct: 749 GY---QSGYK 755
>IMGA|Medtr1g076760.1 hypothetical protein
chr01_pseudomolecule_IMGAG_V3 15437706-15436255 H
EGN_Mt090430 20090702
Length = 186
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 15/77 (19%)
Query: 233 GEALLTAVY---RSPCFPLQYDTPERVWSGKDVSYDHLRVFGCKAFVHVPKDERSKLNVK 289
GEAL T V+ SP LQY+ +++W K++SYDHL VFGCK + VK
Sbjct: 110 GEALSTIVHVLNLSPSVSLQYEVRDKIWLRKNISYDHLCVFGCKTY------------VK 157
Query: 290 TRQCVFIGYGQDQCGYK 306
++ C+F+ Y D Y+
Sbjct: 158 SQHCMFLCYDLDGADYR 174
>IMGA|Medtr8g128700.1 Integrase, catalytic region
chr08_pseudomolecule_IMGAG_V3 30179122-30179823 H
EGN_Mt090430 20090702
Length = 193
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 21/108 (19%)
Query: 53 VENDSTVELWHKRLRHMSKK---TLARKNVL-------PGLDEVHLDKCPDCMAGKQNRV 102
++ + +LWH RL HMS++ LA+ N+L PGL E + GK++R
Sbjct: 95 IDQEDMTKLWHMRLGHMSERGMQILAKDNLLYGHKIKDPGLSEHY-------AFGKRHRN 147
Query: 103 AF-KIIPPSRMKKVLNLIHSDLCGPLMMX-YGGNRYFVTFIDDHSRKT 148
F K+I R K L+ IH D P + GG++YF++ IDD+SR T
Sbjct: 148 KFLKVI--HRTKGTLDYIHDDCWEPSRVESLGGHKYFLSLIDDYSRMT 193
>IMGA|Medtr4g019480.1 Integrase, catalytic region
chr04_pseudomolecule_IMGAG_V3 3983257-3980975 H
EGN_Mt090430 20090702
Length = 102
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 102 VAFKIIPPSRMKKVLNLIHSDLCGPLMMXYGGNRYFVTFIDDHSRKTWVYTLKS 155
V+F P + +L+L+HSD+C G YFVTFIDDHSRK + +KS
Sbjct: 32 VSFHESSPHKRPNLLDLVHSDICMMDSKSIDGASYFVTFIDDHSRKVQTFVMKS 85