Jatropha Genome Database

JcCB0136181.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0136181.20 - phase: 0 /pseudo/partial
         (213 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g103040.1 Heat shock protein Hsp20 chr03_pseudomolecu...   112   1e-25
IMGA|Medtr3g069230.1 Heat shock protein Hsp20 chr03_pseudomolecu...    79   2e-15
IMGA|Medtr3g122960.2 Heat shock protein Hsp20 chr03_pseudomolecu...    54   5e-08
IMGA|Medtr3g122960.1 Heat shock protein Hsp20 chr03_pseudomolecu...    52   2e-07

>IMGA|Medtr3g103040.1 Heat shock protein Hsp20
           chr03_pseudomolecule_IMGAG_V3 25274000-25272930 F
           EGN_Mt090430 20090702
          Length = 221

 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/127 (51%), Positives = 73/127 (57%), Gaps = 3/127 (2%)

Query: 28  FIVKAKAAENRDNLDHLXXXXXXXXXXXXXXXXRTAPVAPVGLWDRFPTARTVQQXXXXX 87
           F V+A   E R+ LDH+                R  P AP+GLWDRFPT RTVQ+     
Sbjct: 27  FRVRAMTGEAREKLDHVSRSNNIKHHQSQPKK-RVFPAAPIGLWDRFPTTRTVQEMMETM 85

Query: 88  XXXXXDPFAY-TGTWPSEP-PSPVERSGYSRGRTPWEIKEGETEYKMRFDMPGMTKEDVK 145
                DPFA  T  WPS P P         RGRTPWEIKEGE+EYKMRFDMPGM KEDVK
Sbjct: 86  ESMMEDPFAMSTIEWPSSPLPIEGVGGYRRRGRTPWEIKEGESEYKMRFDMPGMNKEDVK 145

Query: 146 VWVKRRC 152
           VWV+ + 
Sbjct: 146 VWVEEKM 152


>IMGA|Medtr3g069230.1 Heat shock protein Hsp20
           chr03_pseudomolecule_IMGAG_V3 16534178-16535317 E
           EGN_Mt090430 20090702
          Length = 235

 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 61/104 (58%), Gaps = 4/104 (3%)

Query: 61  RTAPVAPVGLWDRFPTARTVQQXXXXXXXXXXDPFAYTGTWPSEPPSPVERSGYSRGRTP 120
           + +  +P  L ++FP ARTVQQ          +P  Y     + P   VE   +++G+ P
Sbjct: 66  KVSQTSPRVLLNQFPVARTVQQMMDTMDRIVENPLVYND---NSPWIVVENGEHNKGKIP 122

Query: 121 WEIKEGETEYKMRFDMPGMTKEDVKVWVKRRCW-FESRGGAREK 163
           W IKEG+ +YK+RF+MPGM K+DVKVW++ +    ++   ARE+
Sbjct: 123 WAIKEGQNDYKIRFNMPGMNKKDVKVWIEEKMLVVKAEKVAREQ 166


>IMGA|Medtr3g122960.2 Heat shock protein Hsp20
           chr03_pseudomolecule_IMGAG_V3 30727393-30726084 F
           EGN_Mt090430 20090702
          Length = 235

 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 15/85 (17%)

Query: 65  VAPVGLWDRFPTARTVQQXXXXXXXXXXDPFAYTGTWPSEPPSPVERSGYSRGRTPWEIK 124
           ++P GL D +   R+++Q          D   + G                  R PW+IK
Sbjct: 94  ISPFGLLDPWSPMRSMRQMLDTMDRIFEDTMTFGG---------------GEIRVPWDIK 138

Query: 125 EGETEYKMRFDMPGMTKEDVKVWVK 149
           + E E KMRFDMPG++KEDVKV V+
Sbjct: 139 DEENEIKMRFDMPGLSKEDVKVSVE 163


>IMGA|Medtr3g122960.1 Heat shock protein Hsp20
           chr03_pseudomolecule_IMGAG_V3 30727393-30726084 F
           EGN_Mt090430 20090702
          Length = 266

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/32 (68%), Positives = 27/32 (84%)

Query: 118 RTPWEIKEGETEYKMRFDMPGMTKEDVKVWVK 149
           R PW+IK+ E E KMRFDMPG++KEDVKV V+
Sbjct: 163 RVPWDIKDEENEIKMRFDMPGLSKEDVKVSVE 194