Jatropha Genome Database
- JcCB0135871.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0135871.10 - phase: 2 /TE/partial
(298 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 105 3e-23
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 102 2e-22
IMGA|Medtr4g157500.1 polyprotein-like, putative chr04_pseudomole... 102 2e-22
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 99 2e-21
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 98 5e-21
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 98 5e-21
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po... 91 9e-19
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 78 6e-15
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po... 67 9e-12
IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA po... 59 4e-09
IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA po... 56 2e-08
IMGA|Medtr1g102700.1 hypothetical protein chr01_pseudomolecule_I... 49 4e-06
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 107/200 (53%), Gaps = 11/200 (5%)
Query: 1 EMKDMGEASYVIGIEIFHNRSLGLLGLSQRAYIDKVLKRFRMEKCSARIVPI*KGDRFS- 59
++KD+G+ Y +GIE+ H++ LG+ L QR Y +L P +
Sbjct: 957 KIKDLGQLKYFLGIEVAHSK-LGI-SLYQRKYCLDLLHDSGHIGSKPISTPSDPSTKLHH 1014
Query: 60 EMQCPQNDLERKEMESIPYASIAGSLMYVQTCTRPDISFTVGMLRRYQSNFGMDHWKAAK 119
+ P +D+ Y + G L+Y+ TRPDI+F L ++ SN + H AA
Sbjct: 1015 DTSTPYDDIPA-------YRRLVGRLLYLNN-TRPDITFITQQLSQFLSNPTIAHHNAAL 1066
Query: 120 KILRYLQGTKDHILTYRKSTHLEVVGYSDSNYASCVDSRKSTFGYLFFLAKRAVSWKSRK 179
+ LRYL+ L + +++ L + G+SD+++A C+D+RKS G FFL +SW+++K
Sbjct: 1067 RTLRYLKSCPGKGLFFPRNSSLTLQGFSDADWAGCLDTRKSVTGQCFFLGNSLISWRTKK 1126
Query: 180 QSVIATSTIEAEFVACFEAT 199
Q+ ++ S+ EAE+ A AT
Sbjct: 1127 QTTVSRSSSEAEYRALASAT 1146
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 106/200 (53%), Gaps = 11/200 (5%)
Query: 1 EMKDMGEASYVIGIEIFHNRSLGLLGLSQRAYIDKVLKRFRMEKCSARIVPI*KGDRFSE 60
E+KD+G+ Y +G+E+ H+ S G+ L QR Y +L P S+
Sbjct: 1102 EIKDLGQLKYFLGLEVAHS-SQGI-SLCQRKYCLDLLTDIGFLAAKPASTP-------SD 1152
Query: 61 MQCPQNDLERKEMESIP-YASIAGSLMYVQTCTRPDISFTVGMLRRYQSNFGMDHWKAAK 119
C + IP Y + G L+Y+ T TRP I+F L ++ ++ H+ AA
Sbjct: 1153 PSCKLHADGGPPFSDIPSYRRLIGRLIYL-TNTRPYITFATQQLSQFLNSPTEKHYIAAT 1211
Query: 120 KILRYLQGTKDHILTYRKSTHLEVVGYSDSNYASCVDSRKSTFGYLFFLAKRAVSWKSRK 179
+ILRYL+ + L + + + L + GYSD+++A C+DSR+S G FFL +SWK++K
Sbjct: 1212 RILRYLKKSPGQGLFFPRDSSLFLSGYSDADWAGCLDSRRSISGQCFFLGHSLISWKTKK 1271
Query: 180 QSVIATSTIEAEFVACFEAT 199
Q ++ S+ EAE+ A AT
Sbjct: 1272 QLTVSRSSSEAEYRALGAAT 1291
>IMGA|Medtr4g157500.1 polyprotein-like, putative
chr04_pseudomolecule_IMGAG_V3 39269652-39268814 H
EGN_Mt090430 20090702
Length = 260
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 109/200 (54%), Gaps = 11/200 (5%)
Query: 1 EMKDMGEASYVIGIEIFHNRSLGLLGLSQRAYIDKVLKRFRMEKCSARIVPI*KGDRFSE 60
++KD+G+ YV+G+E+ H++ + L QR Y +L + + P+ S+
Sbjct: 42 KIKDLGQLKYVLGLEVAHSKQG--ISLCQRKYCLDLLS----DSGTINSKPV---STSSD 92
Query: 61 MQCPQNDLERKEMESIP-YASIAGSLMYVQTCTRPDISFTVGMLRRYQSNFGMDHWKAAK 119
++ E IP Y + G L+Y+ + TRPDI+F L ++ S H AA
Sbjct: 93 ASLKLHNDSSPPYEDIPSYRRLIGRLLYLNS-TRPDITFITQQLSQFLSKPTQTHHNAAL 151
Query: 120 KILRYLQGTKDHILTYRKSTHLEVVGYSDSNYASCVDSRKSTFGYLFFLAKRAVSWKSRK 179
++L+YL+ L + +++ L + G+SD ++A CVDSR+S G FF+ +SW+++K
Sbjct: 152 RVLKYLKCCPGKGLFFPRNSSLHLQGFSDVDWAGCVDSRRSISGQCFFIGNSLISWRTKK 211
Query: 180 QSVIATSTIEAEFVACFEAT 199
Q+ ++ S+ EAE+ A AT
Sbjct: 212 QTTVSRSSSEAEYRALASAT 231
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 104/200 (52%), Gaps = 11/200 (5%)
Query: 1 EMKDMGEASYVIGIEIFHNRSLGLLGLSQRAYIDKVLKRFRMEKCSARIVPI*KGDRFSE 60
++KD+G+ Y +GIE+ H++ LG+ L QR Y +L P S+
Sbjct: 1111 KIKDLGQLKYFLGIEVAHSK-LGI-SLCQRKYCLDLLADIGSLGSKPISTP-------SD 1161
Query: 61 MQCPQNDLERKEMESIPYAS-IAGSLMYVQTCTRPDISFTVGMLRRYQSNFGMDHWKAAK 119
+ E +P + G L+Y+ TRPDI+F L ++ S H AA
Sbjct: 1162 SSIKLHLDSSSPFEDVPACRRLVGRLLYLNN-TRPDITFITQQLSQFLSQPTQAHHSAAL 1220
Query: 120 KILRYLQGTKDHILTYRKSTHLEVVGYSDSNYASCVDSRKSTFGYLFFLAKRAVSWKSRK 179
++L+YL+ L + +S+ L + G+SD+++A C+D+R+S G FFL +SW+++K
Sbjct: 1221 RVLKYLKSCPGKGLFFPRSSSLNLQGFSDADWAGCIDTRRSISGQCFFLGNSLISWRTKK 1280
Query: 180 QSVIATSTIEAEFVACFEAT 199
Q ++ S+ EAE+ A AT
Sbjct: 1281 QITVSKSSSEAEYRALASAT 1300
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 107/203 (52%), Gaps = 17/203 (8%)
Query: 1 EMKDMGEASYVIGIEIFHNRSLGLLGLSQRAYIDKVLKRFRMEKCSARIVPI*KGDRFSE 60
++KD+G+ + +G+E+ H++ LG+ L Q+ Y +L P
Sbjct: 1085 KIKDLGQLKFFLGLEVAHSQ-LGI-SLCQKKYCLDLLADSGTIGSKPASTP--------- 1133
Query: 61 MQCPQNDLERK---EMESIP-YASIAGSLMYVQTCTRPDISFTVGMLRRYQSNFGMDHWK 116
P L + E IP Y + G L+Y+ T TRPDI++ L ++ S H
Sbjct: 1134 -SDPSLKLHKDGALPYEDIPSYRRLIGRLLYLNT-TRPDITYITQQLSQFLSAPTHTHHS 1191
Query: 117 AAKKILRYLQGTKDHILTYRKSTHLEVVGYSDSNYASCVDSRKSTFGYLFFLAKRAVSWK 176
AA ++LRYL+ L + +++ L++ GYSD+++A C+D+R+S G FFL +SW+
Sbjct: 1192 AALRVLRYLKNCPGKGLFFPRNSPLQLQGYSDADWAGCLDTRRSISGQCFFLGNSLISWR 1251
Query: 177 SRKQSVIATSTIEAEFVACFEAT 199
++KQ ++ S+ EAE+ A AT
Sbjct: 1252 TKKQVTVSRSSSEAEYRALASAT 1274
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 103/200 (51%), Gaps = 11/200 (5%)
Query: 1 EMKDMGEASYVIGIEIFHNRSLGLLGLSQRAYIDKVLKRFRMEKCSARIVPI*KGDRFSE 60
++KD+G+ Y +G+E+ H++ LG+ L QR Y +L + P +
Sbjct: 452 KIKDLGQLKYFLGLEVAHSK-LGI-SLCQRKYGLDLLSDTGLLDSKPVATPSDPSIKLYH 509
Query: 61 MQCPQNDLERKEMESIP-YASIAGSLMYVQTCTRPDISFTVGMLRRYQSNFGMDHWKAAK 119
P IP Y + G L+Y+ TRPDI+F L ++ S H+ AA
Sbjct: 510 DDSPL-------YTDIPAYRRLVGRLLYLN-ATRPDITFITQQLSQFLSKPTQTHYNAAL 561
Query: 120 KILRYLQGTKDHILTYRKSTHLEVVGYSDSNYASCVDSRKSTFGYLFFLAKRAVSWKSRK 179
++LRYL+ L + +S+ + GYSD+++A C D+R+S G FFL +SW+++K
Sbjct: 562 RVLRYLKTCPGKGLHFPRSSLPYIQGYSDADWAGCRDTRRSISGQCFFLGDSLISWRTKK 621
Query: 180 QSVIATSTIEAEFVACFEAT 199
Q ++ S+ EAE+ A AT
Sbjct: 622 QLTVSRSSSEAEYRALGAAT 641
>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33218578-33217607 H EGN_Mt090430 20090702
Length = 309
Score = 90.5 bits (223), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 112/228 (49%), Gaps = 30/228 (13%)
Query: 2 MKDMGEASYVIGIEIFHNRSLGLLGLSQRAYIDKVLKRFRMEKCSARIVPI*KGDRFSEM 61
MKD+G Y +G+E+ R L + QR Y +L +M C P+ + +
Sbjct: 33 MKDLGPLKYFLGLEL--ARGANGLFMCQRKYTLDILDECKMLDCKPSTFPMEQNQKLVLD 90
Query: 62 QCPQ-NDLERKEMESIPYASIAGSLMYVQTCTRPDISFTVGMLRRYQSNFGMDHWKAAKK 120
+ P +D R Y + L+Y+ T P+I+++V +L +
Sbjct: 91 KGPTCSDPSR-------YRRLISRLIYL-TIMHPEITYSVHIL--------------TMR 128
Query: 121 ILRYLQGTKDHILTYRKSTHLEVVGYSDSNYASCVDSRKSTFGYLFFLAKRAVSWKSRKQ 180
+LRYL+ + + K L++V Y DS++ASC +R+ST GYL L +SWK++KQ
Sbjct: 129 VLRYLKSSPGQGIILPKENDLQLVAYCDSDWASCPLTRRSTSGYLMKLGSAPISWKTKKQ 188
Query: 181 SVIATSTIEAEFVACFEATVHALRCKTLSQV*ALSTV*LDY*EFTVII 228
S ++ S+ EAE+ A +A + ++L LS++ + Y TV++
Sbjct: 189 STVSKSSSEAEYRAMGQAVSEVIWLRSL-----LSSLQVHYDSPTVLL 231
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 107/201 (53%), Gaps = 14/201 (6%)
Query: 6 GEASYVIGIEIFHNRSLGLLGLSQRAYIDKVLKRFRMEKCSARIVPI*KGDRFSEMQCPQ 65
G + +I +EI R+ L L+Q Y ++ K+F M ++ I + + +E++
Sbjct: 311 GTSLLIICLEIL--RTTKGLILNQTKYDTEIQKKFNMLDFNSSIT-LAYANNINEVK--- 364
Query: 66 NDLERKEMESIPYASIAGSLMYVQTC-TRPDISFTVGMLRRYQSNFGMDHWKAAKKILRY 124
E K ++ + G L Y+ C +R DIS++VG++ ++ SN H+ AAKKI+RY
Sbjct: 365 --EEDKGVDPTILRRLIGLLRYL--CQSRLDISYSVGIVSKFMSNPLKTHFLAAKKIIRY 420
Query: 125 LQGTKDHILTY---RKSTHLEVVGYSDSNYASCVDSRKSTFGYLFFLAKRAVSWKSRKQS 181
+ GT + + + +++ L ++ YSD+++ R+ T +LF L +SW S+KQ
Sbjct: 421 IHGTLQYGILFPEAQETEQLSMIDYSDADWCRDKRDRRRTTSFLFMLQGAPISWSSKKQP 480
Query: 182 VIATSTIEAEFVACFEATVHA 202
++A S+ E E+V A A
Sbjct: 481 IVALSSCEVEYVVGSSAACQA 501
>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
H EGN_Mt090430 20090702
Length = 509
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 13/150 (8%)
Query: 25 LGLSQRAYIDKVLKRFRMEKCSARIVPI*KGDRFSEMQCPQNDLERKEMESIPYASIAGS 84
+ L QR Y +L + C + P+ P D + + Y + G
Sbjct: 296 ISLCQRKYCLDLLSDAGLTTCKSVSTPLDYACLLHIDDGPPFD------DVLAYRCLIGC 349
Query: 85 LMYVQTCTRPDISFTVGMLRRYQSNFGMDHWKAAKKILRYLQGTKDHILTYRKSTHLEVV 144
L+Y+ T TRPDISF L ++ + ++H + A +LRYLQ L + +++ ++++
Sbjct: 350 LLYLTT-TRPDISFATQQLSQFMAKPSVNHHRTALCVLRYLQVCPGRGLFFPRTSEMQLL 408
Query: 145 GYSDSNYASCVDSRKS------TFGYLFFL 168
G+SD+++ CVDSR+S +LFFL
Sbjct: 409 GFSDADWGGCVDSRRSLAFQEAIHRFLFFL 438
>IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
27872933-27871392 E EGN_Mt090430 20090702
Length = 256
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 93/212 (43%), Gaps = 41/212 (19%)
Query: 1 EMKDMGEASYVIGIEIFHNRSLGLLGLSQRAYIDKVLKRFRMEKCSARIVPI*KGDRFS- 59
+KD+G Y +GIE+ +S G L ++Q Y+ +L + M++ + P+ + S
Sbjct: 30 SLKDLGALKYFLGIEV-KPQSNGSLLITQSKYVRDLLAKTDMQEAKSLPSPMISDLKLSK 88
Query: 60 EMQCPQND--LERKEMESIPYASIAGSLMYVQTCTRPDISFTVGMLRRYQSNFGMDHWKA 117
+ P +D L R + ++ YA++ G L
Sbjct: 89 DGSTPFSDPTLCRSIVRALQYANLIGPL-------------------------------- 116
Query: 118 AKKILRYLQGTKDHILTYRK--STHLEVVGYSDSNYASCVDSRKSTFGYLFFLAKRAVSW 175
+LR+L+GT L R + L ++ Y D+++ S D R + FL +SW
Sbjct: 117 -SNVLRHLKGTLSWGLLVRPIPTYPLSILAYCDADWGSDPDDR--SVDACVFLGPNLISW 173
Query: 176 KSRKQSVIATSTIEAEFVACFEATVHALRCKT 207
++KQ+VIA S+ EAE+ + A L KT
Sbjct: 174 WAKKQAVIARSSTEAEYSSLALAKSELLWIKT 205
>IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
24473881-24473486 H EGN_Mt090430 20090702
Length = 131
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 14/141 (9%)
Query: 14 IEIFHNRSLGLLGLSQRAYIDKVLKRFRMEKCSARIVPI*KGDRFSEMQCPQNDLERKEM 73
+EI N S GL+ L Q Y ++LK+F M C++ I D + + D + +
Sbjct: 1 MEILIN-SKGLI-LHQTDYASEILKKFNMLDCNSTIT---HADANIIYEVKEED---EGV 52
Query: 74 ESIPYASIAGSLMYVQTC-TRPDISFTVGMLRRYQSNFGMDHWKAAKKILRYLQGTKDH- 131
+ + + GSL Y+ C +RP IS+ VG++ R+ SN ++ +AKKILRY+ T +
Sbjct: 53 DPTMFRRLIGSLRYL--CQSRPGISYLVGIVSRFMSNPLKTNFLSAKKILRYINSTLQYG 110
Query: 132 --ILTYRKSTHLEVVGYSDSN 150
L + + L++ GYSD++
Sbjct: 111 ILFLVVQATEQLDMEGYSDAD 131
>IMGA|Medtr1g102700.1 hypothetical protein
chr01_pseudomolecule_IMGAG_V3 21129202-21129726 H
EGN_Mt090430 20090702
Length = 135
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 66 NDLERKEMESIPYASIAGSLMYVQTCTRPDISFTVGMLRRYQSNFGMDHWKAAKKILRYL 125
N+ ++ ++ + + G L Y+ TRPD++ ++G+L ++ N G+ H A K++L Y+
Sbjct: 19 NEQRKENVDFTQFRMLIGCLRYLCN-TRPDLALSIGLLSQFMQNLGVSHMIAVKRMLIYI 77
Query: 126 QGTKDHILTYRKS 138
+G +H + + +
Sbjct: 78 KGKVEHAILFSNN 90