Jatropha Genome Database
- JcCB0135511.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0135511.10 - phase: 2 /partial
(247 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g107200.1 Winged helix repressor DNA-binding; chr04_p... 298 1e-81
IMGA|Medtr4g107190.1 Winged helix repressor DNA-binding; chr04_p... 289 7e-79
IMGA|Medtr7g132600.1 Transcription factor E2F/dimerisation partn... 234 4e-62
>IMGA|Medtr4g107200.1 Winged helix repressor DNA-binding;
chr04_pseudomolecule_IMGAG_V3 23346768-23350809 E
EGN_Mt090430 20090702
Length = 344
Score = 298 bits (764), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 149/201 (74%), Positives = 159/201 (79%), Gaps = 1/201 (0%)
Query: 48 EQAMATPASDSTFLRLNHLX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXSGRGLRQFSMK 106
EQ + T A D+T LRLNHL SGRGLRQFSMK
Sbjct: 44 EQTIGTAAGDNTALRLNHLDIQDDDAASQGVVASKKKKRGQQRATGGDKSGRGLRQFSMK 103
Query: 107 VCEKVESKGTTTYNEVADELVAEFADPSNSVSSPDQQQYDEKNIRRRVYDALNVLMALDI 166
VCEKVESKG TTYNEVADELVAEFADP NSV +PD+QQYDEKNIRRRVYDALNVLMA+DI
Sbjct: 104 VCEKVESKGRTTYNEVADELVAEFADPINSVLTPDKQQYDEKNIRRRVYDALNVLMAMDI 163
Query: 167 ISKDKKEIQWKGLPRTSLSDIEELKAERLALRNRIEKKSAYLQELEEQYVGLQNLINRNE 226
ISKDKKEIQWKGLPRTSL+DIEELK ERL LRNRIE+KS+YLQELEEQ+VGLQNL+ RNE
Sbjct: 164 ISKDKKEIQWKGLPRTSLNDIEELKTERLGLRNRIERKSSYLQELEEQFVGLQNLVKRNE 223
Query: 227 QLYSSGNAPSGGVSLPFILVQ 247
QLYSSGN PSGGVSLPFILVQ
Sbjct: 224 QLYSSGNPPSGGVSLPFILVQ 244
>IMGA|Medtr4g107190.1 Winged helix repressor DNA-binding;
chr04_pseudomolecule_IMGAG_V3 23341240-23345522 E
EGN_Mt090430 20090702
Length = 342
Score = 289 bits (740), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 145/200 (72%), Positives = 156/200 (78%), Gaps = 2/200 (1%)
Query: 48 EQAMATPASDSTFLRLNHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGRGLRQFSMKV 107
EQ T A D+ L+LNHL +GRGLRQFSMKV
Sbjct: 43 EQTTGTAAGDNAALKLNHLDIQDDDAASQAVVATKKKKRRAVGGDK--NGRGLRQFSMKV 100
Query: 108 CEKVESKGTTTYNEVADELVAEFADPSNSVSSPDQQQYDEKNIRRRVYDALNVLMALDII 167
CEKVESKG TTYNEVADELVAEF+DPSN SPDQQQYDEKNIRRRVYDALNVLMA+DII
Sbjct: 101 CEKVESKGRTTYNEVADELVAEFSDPSNGGLSPDQQQYDEKNIRRRVYDALNVLMAMDII 160
Query: 168 SKDKKEIQWKGLPRTSLSDIEELKAERLALRNRIEKKSAYLQELEEQYVGLQNLINRNEQ 227
SKDKKEIQWKGLPRTSLSDIEELK +RL LR+RIE+K+AYLQELE+Q+VGLQNLI RNEQ
Sbjct: 161 SKDKKEIQWKGLPRTSLSDIEELKTQRLGLRSRIERKAAYLQELEQQFVGLQNLIQRNEQ 220
Query: 228 LYSSGNAPSGGVSLPFILVQ 247
LYSSGN PSGGVSLPFILVQ
Sbjct: 221 LYSSGNPPSGGVSLPFILVQ 240
>IMGA|Medtr7g132600.1 Transcription factor E2F/dimerisation partner
(TDP); chr07_pseudomolecule_IMGAG_V3 30727370-30721352 H
EGN_Mt090430 20090702
Length = 462
Score = 234 bits (596), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 116/152 (76%), Positives = 130/152 (85%), Gaps = 3/152 (1%)
Query: 96 SGRGLRQFSMKVCEKVESKGTTTYNEVADELVAEFADPSNSVSSPDQQQYDEKNIRRRVY 155
S RGL Q SMKV EKVESKG TT+NEVADELVAE ADP NS SP++QQYDEKN+RRR Y
Sbjct: 70 SRRGLPQISMKVLEKVESKGRTTFNEVADELVAELADPMNSGLSPNKQQYDEKNVRRRAY 129
Query: 156 DALNVLMALDIISKDKKEIQWKGLPRTSLSDIEELKAERLALRNRIEKKSAYLQELEEQY 215
D LNVLMA+DIISKDKKEIQWKGLP ++ IEELK ERL +RNRIE K++YL+ELEEQ+
Sbjct: 130 DVLNVLMAMDIISKDKKEIQWKGLPPSA---IEELKIERLGIRNRIESKASYLKELEEQF 186
Query: 216 VGLQNLINRNEQLYSSGNAPSGGVSLPFILVQ 247
VGL+NLI RN+QLY SGN PS GVSLPFILVQ
Sbjct: 187 VGLKNLIQRNKQLYRSGNPPSVGVSLPFILVQ 218