Jatropha Genome Database

JcCB0134471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0134471.10 + phase: 1 /partial
         (286 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g109930.1 hypothetical protein chr03_pseudomolecule_I...   306   9e-84

>IMGA|Medtr3g109930.1 hypothetical protein
           chr03_pseudomolecule_IMGAG_V3 27629998-27625555 H
           EGN_Mt090430 20090702
          Length = 678

 Score =  306 bits (783), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 146/240 (60%), Positives = 189/240 (78%), Gaps = 3/240 (1%)

Query: 1   FYDLYKNVPVLKATASRLCGPLFDWIETWEMVSRIKYLGTMLFLHNFQKAITWFLMXXXX 60
           FYDLYKNVPVLKATASR+CGPLFDWIETWEMVSR+KYLGTMLFLHNFQKAI WFL     
Sbjct: 390 FYDLYKNVPVLKATASRICGPLFDWIETWEMVSRVKYLGTMLFLHNFQKAIRWFLAVTHT 449

Query: 61  XXXXXXXXXQPLLEPLMEVLGFLLPMWNVLIEVVENLVSIIWVATDSVFTAVIDLIQIVL 120
                    QPL+E L+E+ GFLLP  N+L +++E++ S+IW+  ++  T V D+++++ 
Sbjct: 450 TRSFFSFLIQPLIESLVEIFGFLLPSLNILFDLLESIFSVIWIGIETSCTLVGDVVELLF 509

Query: 121 WPMWFIISMVWTIATSVLYPIFWILWEIFYAPIRMVLAIASFIALIGAWISELIGDLWRS 180
            P+WFI+++VW IAT VLYP+FWILWE  YAP+R+V+ I SF+A+I      ++G+ W+ 
Sbjct: 510 LPLWFILTVVWRIATCVLYPLFWILWEFLYAPVRLVMVIFSFLAVICTRACSILGETWQF 569

Query: 181 VSCIFRVASATEATIS--TYEVSMWRSLWNDLFSQV-FRALRSILNGFVAFFTACNRHRL 237
           +  I ++AS++EATIS  +YEVSMWRSLWNDLFSQV F+AL+SI+ G VAFFTACNRHRL
Sbjct: 570 LGSIIQLASSSEATISSASYEVSMWRSLWNDLFSQVIFKALKSIVYGLVAFFTACNRHRL 629