Jatropha Genome Database

JcCB0133991.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0133991.20 - phase: 0 /partial
         (277 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g144020.1 TLDc chr03_pseudomolecule_IMGAG_V3 37259973...   384   e-107

>IMGA|Medtr3g144020.1 TLDc chr03_pseudomolecule_IMGAG_V3
           37259973-37262853 E EGN_Mt090430 20090702
          Length = 531

 Score =  384 bits (987), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 180/260 (69%), Positives = 216/260 (83%), Gaps = 6/260 (2%)

Query: 24  LLTCGRAWAISLTLWSEMSSEILKPYLPSDG---DGTL---SLHGRGLNRFWSNIEGYHG 77
           +LT GRAWAIS+T  + ++ EI + ++ S     D  +   S HGRGLNRFWS++EGYHG
Sbjct: 272 ILTPGRAWAISITQRNTVNEEISRAFIGSGAGLNDNLIYRSSTHGRGLNRFWSHVEGYHG 331

Query: 78  PLLFLVSATSGNAHEDNTNVRKWIIGALTQQGFENKDMFYGSSGKLYAICPIFHTFSHSG 137
           PLL LV+A+S N HE N+ +RK++IGALT +G ENKD+FYG+SG LY++ P+FH F  +G
Sbjct: 332 PLLILVAASSRNGHEGNSAIRKFVIGALTNEGLENKDIFYGTSGCLYSLSPVFHLFPPTG 391

Query: 138 KDKNFVYSHLHPTRRAYEPHPKPVGIAFGGTIGNERIFIDEDFARVTVRHHAVDKTYQPG 197
           K+KNFVYSHLHPT RAY+ HP PVG+AFGGT GNERIFIDEDF++VT+RHHAVDKTYQ G
Sbjct: 392 KEKNFVYSHLHPTGRAYQSHPTPVGVAFGGTPGNERIFIDEDFSKVTIRHHAVDKTYQSG 451

Query: 198 SIFPSQGFLPVEALISEVEVWGLGGRTAKEVQASYKKREDLFIEQRRKVDLKTFASWEDS 257
           S+ P QGFLP EA ISEVEVWGLGG+ AKEVQ SYKKRE+LF +QRRK+DLKTFA+WEDS
Sbjct: 452 SLLPDQGFLPTEAHISEVEVWGLGGKAAKEVQNSYKKREELFTDQRRKIDLKTFANWEDS 511

Query: 258 PEKMMMDMMSDPNAVRREDR 277
           PEKMMMDMMSDPNA RREDR
Sbjct: 512 PEKMMMDMMSDPNAARREDR 531