Jatropha Genome Database

JcCB0131991.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0131991.10 - phase: 2 /pseudo/partial
         (179 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g126390.1 Oligosaccharide biosynthesis protein Alg14 ...   221   1e-58
IMGA|Medtr5g029620.1 Oligosaccharide biosynthesis protein Alg14 ...    99   1e-21

>IMGA|Medtr2g126390.1 Oligosaccharide biosynthesis protein Alg14
           like chr02_pseudomolecule_IMGAG_V3 30610392-30612311 E
           EGN_Mt090430 20090702
          Length = 233

 Score =  221 bits (564), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 114/174 (65%), Positives = 137/174 (78%), Gaps = 7/174 (4%)

Query: 9   KDESCCPISTNIIISLVFIAMVRIF------YVIYRSGKPLRPKSPKPMSTLIVLGSGGH 62
           K   CC  S + I +L  +A V I       +VIY SG+PL  ++ KP+STLI+LGSGGH
Sbjct: 3   KGNGCCFSSLSSIATLSSVAFVVILILVRVVHVIYSSGRPLSKRASKPVSTLIILGSGGH 62

Query: 63  TAEMINVLSVLQKDWFTPRFYIAAATDNMSLQKARVLEDSLIDTTGDKVV-SAKFMQIYR 121
           TAEM+N+L+VLQKD F PRFYIAAATDNMSLQKA +LE+SL   +G  V  +A+FM+IYR
Sbjct: 63  TAEMLNLLAVLQKDRFKPRFYIAAATDNMSLQKAILLENSLASESGTAVADTAQFMKIYR 122

Query: 122 SREVGQSYITSIGTTLIAVAHALCLMIKIRPQVILCNGPGTCVPLCIIAY*FKV 175
           SREVGQSYITSI TTLIA+ HAL LMIKIRP+VILCNGPGTC+PLC+IA+ FKV
Sbjct: 123 SREVGQSYITSIWTTLIAIVHALWLMIKIRPEVILCNGPGTCIPLCVIAFIFKV 176


>IMGA|Medtr5g029620.1 Oligosaccharide biosynthesis protein Alg14
           like chr05_pseudomolecule_IMGAG_V3 12365530-12366836 H
           EGN_Mt090430 20090702
          Length = 121

 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/111 (49%), Positives = 74/111 (66%), Gaps = 14/111 (12%)

Query: 24  LVFIAMVRIFYVIYRSGKPLRPKSPKPMSTLIVLGSGGHTAEMINVLSVLQKDWFTPRFY 83
           +V + +VR  +VIYRSGKPL  ++ KP+STLI+LGSGGHTAEM+N+L+VL+KD F     
Sbjct: 24  VVILILVRAIHVIYRSGKPLSKRALKPVSTLIILGSGGHTAEMLNLLTVLEKDRFI---- 79

Query: 84  IAAATDNMSLQKARVLEDSLIDTTGDKVV-SAKFMQIYRSREVGQSYITSI 133
                    L + +       + +G  V  +A+FM+IYRSREVGQSYITS 
Sbjct: 80  ---------LPEVQFGYWETGNKSGTNVAETAQFMKIYRSREVGQSYITSF 121