Jatropha Genome Database

JcCB0131911.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0131911.20 + phase: 0 /partial
         (187 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g130010.1 Histidinol dehydrogenase chr02_pseudomolecu...   302   6e-83

>IMGA|Medtr2g130010.1 Histidinol dehydrogenase
           chr02_pseudomolecule_IMGAG_V3 31578373-31584802 E
           EGN_Mt090430 20090702
          Length = 478

 Score =  302 bits (774), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 142/186 (76%), Positives = 164/186 (88%)

Query: 1   MKSYQLSELSRTEVESLKARPRIDFFSIFSIVTPIVDDVRSRGDAAVKDYTTRFDKVKLE 60
           +K+Y LS L++TE+ SLK+RPRIDF S+F IV PIVDDV + GDAAVK YT++FDKV LE
Sbjct: 43  IKTYHLSNLTQTELLSLKSRPRIDFSSVFDIVNPIVDDVHAHGDAAVKQYTSKFDKVDLE 102

Query: 61  KIVEDVSELPDPELDAAVREAFDVAYDNIYAFHLAQKAAEKSVENMQGVRCKRVPRCISS 120
            IVE VS+LPDP LD A++EAFDVAY NIYAFH AQK+ EKSVENM+GV+CKRV R I+S
Sbjct: 103 NIVELVSDLPDPVLDPAIKEAFDVAYSNIYAFHAAQKSPEKSVENMKGVQCKRVARSINS 162

Query: 121 VGLYVPGGTAVLPSTALMLSVPAQIAGCKTIVIATPPGQDGSICKEVLYCAKKAGVTHIL 180
           VGLYVPGGTAVLPSTALML+VPAQIAGCKTIV+A PP +DG+ CKEVLYCAKKAGVTH+L
Sbjct: 163 VGLYVPGGTAVLPSTALMLAVPAQIAGCKTIVLANPPTRDGTTCKEVLYCAKKAGVTHLL 222

Query: 181 KAGGAQ 186
           KAGGAQ
Sbjct: 223 KAGGAQ 228