Jatropha Genome Database

JcCB0131911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0131911.10 + phase: 1 /partial
         (198 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g130000.1 hypothetical protein chr02_pseudomolecule_I...    52   2e-07

>IMGA|Medtr2g130000.1 hypothetical protein
           chr02_pseudomolecule_IMGAG_V3 31576122-31577362 H
           EGN_Mt090430 20090702
          Length = 383

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 69/139 (49%), Gaps = 38/139 (27%)

Query: 79  ANKSWADIVEEEENQKLLTGKDLSPCFDDTWGYEN----EYNDENQDSNIIHNQTCPKSP 134
           A KSWAD+VEEE+  +          F    GY N     + +EN++SNI++     +S 
Sbjct: 259 AKKSWADMVEEEQQSEEYE------LFYK--GYTNFDAQVFQNENENSNIVYQPPSRRSH 310

Query: 135 VDT--ITEKLEACDIKDGYNTFNHSVSP------RNPTARRSL-----------CFNGNQ 175
            +T  + + LE  ++KDGYN      +P      RNPT RRSL            F+G +
Sbjct: 311 YETESLNQNLEFMNLKDGYN-----AAPVNDTWLRNPTVRRSLFTNAEMTNERDVFSGEE 365

Query: 176 DYNMRKKNRLQVFRDITST 194
               R   RLQVF+DITS+
Sbjct: 366 KRTRRA--RLQVFQDITSS 382