Jatropha Genome Database

JcCB0130701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0130701.10 - phase: 0 /partial
         (272 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g109840.1 Proteasome component region PCI chr08_pseud...   439   e-124
IMGA|Medtr8g109930.1 Proteasome component region PCI chr08_pseud...   416   e-117
IMGA|Medtr8g109840.2 Probable 26S proteasome non-ATPase regulato...   229   2e-60

>IMGA|Medtr8g109840.1 Proteasome component region PCI
           chr08_pseudomolecule_IMGAG_V3 24729724-24726359 F
           EGN_Mt090430 20090702
          Length = 387

 Score =  439 bits (1130), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/271 (81%), Positives = 238/271 (87%), Gaps = 1/271 (0%)

Query: 2   EGQEGTQQPHLVLAHKRFLLTHPDVQDIEKVRLKEEVFAAVKDDDMAPLYETLMAEGILD 61
           EG+E  QQP LVLA K FLL   DVQDI+KVR KE+VF  VK+ DM PLYETL+A+ +LD
Sbjct: 4   EGEE-VQQPQLVLADKLFLLKQKDVQDIDKVRFKEDVFNFVKEHDMVPLYETLVADSVLD 62

Query: 62  KDQSVLDSMRAXXXXXXXXXXXXIADAEENLGESEVREAHLAKSLFFIRIGDKEKALEQM 121
            D+++LDSMRA            IADAEENLGESEVREAHLAKSLFFIRIGDKEKALE +
Sbjct: 63  MDRALLDSMRAKIDDELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKEKALEHL 122

Query: 122 KVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKNLFEEGGDWERKNRLKVYE 181
           K+TE+KTVAVGQKMDLVFYTLQLGFF MDFDLISKSIDKAK+LFEEGGDWERKNRLKVYE
Sbjct: 123 KITETKTVAVGQKMDLVFYTLQLGFFGMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYE 182

Query: 182 GLYCMSTRNFKKAANLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAP 241
           GLYCMSTRNF+KAA LFLDSISTFTTYELFPYDTFIFYTVLTSII+LDRVSLKQKVVDAP
Sbjct: 183 GLYCMSTRNFEKAATLFLDSISTFTTYELFPYDTFIFYTVLTSIITLDRVSLKQKVVDAP 242

Query: 242 EILTVIGKIPYLSEFLNSLYECQYKSFFSAF 272
           EILTVI KIP+L EFL+SLY CQYKSFFSAF
Sbjct: 243 EILTVIEKIPHLKEFLDSLYGCQYKSFFSAF 273


>IMGA|Medtr8g109930.1 Proteasome component region PCI
           chr08_pseudomolecule_IMGAG_V3 24795758-24790154 E
           EGN_Mt090430 20090702
          Length = 433

 Score =  416 bits (1070), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/248 (83%), Positives = 223/248 (89%)

Query: 25  DVQDIEKVRLKEEVFAAVKDDDMAPLYETLMAEGILDKDQSVLDSMRAXXXXXXXXXXXX 84
           DVQDI+KVR KE+VF  VK+ DM PLYETL+A+ +LD D+++LDSMRA            
Sbjct: 72  DVQDIDKVRFKEDVFNFVKEHDMVPLYETLVADSVLDMDRALLDSMRAKIDDELKKLDEK 131

Query: 85  IADAEENLGESEVREAHLAKSLFFIRIGDKEKALEQMKVTESKTVAVGQKMDLVFYTLQL 144
           IADAEENLGESEVREAHLAKSLFFIRIGDKEKALE +K+TE+KTVAVGQKMDLVFYTLQL
Sbjct: 132 IADAEENLGESEVREAHLAKSLFFIRIGDKEKALEHLKITETKTVAVGQKMDLVFYTLQL 191

Query: 145 GFFYMDFDLISKSIDKAKNLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAANLFLDSIST 204
           GFF MDFDLISKSIDKAK+LFEEGGDWERKNRLKVYEGLYCMSTRNF+KAA LFLDSIST
Sbjct: 192 GFFGMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFEKAATLFLDSIST 251

Query: 205 FTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYECQ 264
           FTTYELFPYDTFIFYTVLTSII+LDRVSLKQKVVDAPEILTVI KIP+L EFL+SLY CQ
Sbjct: 252 FTTYELFPYDTFIFYTVLTSIITLDRVSLKQKVVDAPEILTVIEKIPHLKEFLDSLYGCQ 311

Query: 265 YKSFFSAF 272
           YKSFFSAF
Sbjct: 312 YKSFFSAF 319


>IMGA|Medtr8g109840.2 Probable 26S proteasome non-ATPase regulatory
           subunit 6, putative chr08_pseudomolecule_IMGAG_V3
           24729724-24727643 F EGN_Mt090430 20090702
          Length = 164

 Score =  229 bits (583), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 119/162 (73%), Positives = 132/162 (81%), Gaps = 1/162 (0%)

Query: 2   EGQEGTQQPHLVLAHKRFLLTHPDVQDIEKVRLKEEVFAAVKDDDMAPLYETLMAEGILD 61
           EG+E  QQP LVLA K FLL   DVQDI+KVR KE+VF  VK+ DM PLYETL+A+ +LD
Sbjct: 4   EGEE-VQQPQLVLADKLFLLKQKDVQDIDKVRFKEDVFNFVKEHDMVPLYETLVADSVLD 62

Query: 62  KDQSVLDSMRAXXXXXXXXXXXXIADAEENLGESEVREAHLAKSLFFIRIGDKEKALEQM 121
            D+++LDSMRA            IADAEENLGESEVREAHLAKSLFFIRIGDKEKALE +
Sbjct: 63  MDRALLDSMRAKIDDELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKEKALEHL 122

Query: 122 KVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKN 163
           K+TE+KTVAVGQKMDLVFYTLQLGFF MDFDLISKSIDKAK 
Sbjct: 123 KITETKTVAVGQKMDLVFYTLQLGFFGMDFDLISKSIDKAKR 164