Jatropha Genome Database
- JcCB0130451.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0130451.10 + phase: 0 /TE/pseudo/partial
(421 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 163 2e-40
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 162 3e-40
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 157 7e-39
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 154 6e-38
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 154 9e-38
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 152 2e-37
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 151 5e-37
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu... 140 8e-34
IMGA|Medtr4g157500.1 polyprotein-like, putative chr04_pseudomole... 126 2e-29
IMGA|Medtr6g069750.1 Reverse transcriptase, putative chr06_pseud... 117 1e-26
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po... 107 1e-23
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po... 99 4e-21
IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H... 82 4e-16
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 77 2e-14
IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein, chr0... 72 6e-13
IMGA|Medtr3g162300.1 retrotransposon like protein, putative chr0... 58 1e-08
IMGA|Medtr1g102700.1 hypothetical protein chr01_pseudomolecule_I... 57 1e-08
IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA po... 57 2e-08
IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA po... 56 3e-08
IMGA|Medtr5g086740.1 Reverse transcriptase, RNA-dependent DNA po... 52 7e-07
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/134 (58%), Positives = 95/134 (70%)
Query: 111 PKTVVQALSHPGWCAAMKEEMVALDTNGTWDLVPLPTDKKAIGCKWVFTVKVNPDGSVTR 170
PKT +A H W AM+ E+ AL+ GTW+ V LP + K IGC+WVF +K + DGS+ R
Sbjct: 867 PKTYAEANKHECWQKAMQVELQALEQTGTWNFVDLPPNVKPIGCRWVFKIKRHADGSIER 926
Query: 171 LKARLVAKGYSQIYGLDYSDTFSTVAKLSFVRLFISIAATFDWPLHQLDVKNAFLHGDLX 230
KARLVAKGY+Q+ GLDY DTFS VAKL+ VRL I++A+ W LHQLDV NAFLHGDL
Sbjct: 927 YKARLVAKGYTQVEGLDYFDTFSPVAKLTTVRLIIALASINHWHLHQLDVNNAFLHGDLQ 986
Query: 231 EEVYMEQPLGFVAQ 244
E VYM P G A+
Sbjct: 987 ENVYMTLPPGISAK 1000
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 96/151 (63%), Gaps = 1/151 (0%)
Query: 248 IKEIGKLGTKPCSALMTPNLQLSIDGEL-FDDPEMYRRLVGKLNYLTVTRPDIAYSMSVL 306
+ + G +G+KP S P+L+L DG L ++D YRRL+G+L YL TRPDI Y L
Sbjct: 1119 LADSGTIGSKPASTPSDPSLKLHKDGALPYEDIPSYRRLIGRLLYLNTTRPDITYITQQL 1178
Query: 307 NQFMSSPTVIHWEALGQIFCYLKGNPGHGLLYSNHGHLDIECFSYADWAGLKVNRRSTSG 366
+QF+S+PT H A ++ YLK PG GL + + L ++ +S ADWAG RRS SG
Sbjct: 1179 SQFLSAPTHTHHSAALRVLRYLKNCPGKGLFFPRNSPLQLQGYSDADWAGCLDTRRSISG 1238
Query: 367 YCVFVSGNLISWRSKKQNVFSRSSVKSEYRA 397
C F+ +LISWR+KKQ SRSS ++EYRA
Sbjct: 1239 QCFFLGNSLISWRTKKQVTVSRSSSEAEYRA 1269
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H
fold chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 103/144 (71%), Gaps = 1/144 (0%)
Query: 111 PKTVVQALSHPGWCAAMKEEMVALDTNGTWDLVPLPTDKKAIGCKWVFTVKVNPDGSVTR 170
P T V+A H W AM+ E++AL+ GTWD+V LP K IGC+W++ VK N DGS+ R
Sbjct: 739 PTTYVEASKHDCWNKAMQAELLALEKTGTWDIVDLPAYVKPIGCRWIYKVKHNADGSIER 798
Query: 171 LKARLVAKGYSQIYGLDYSDTFSTVAKLSFVRLFISIAATFDWPLHQLDVKNAFLHGDLX 230
KARLVAKGY+QI GLDY +T+S VAKL+ VRL I++A+ +W LHQLDV NAFLHG+L
Sbjct: 799 YKARLVAKGYTQIEGLDYFETYSPVAKLTTVRLVIALASIHNWHLHQLDVNNAFLHGELQ 858
Query: 231 EEVYMEQPLGF-VAQGESIKEIGK 253
E+VYM P G +A+ + ++ K
Sbjct: 859 EDVYMILPPGINIAKPHQVCKLKK 882
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 93/151 (61%), Gaps = 1/151 (0%)
Query: 248 IKEIGKLGTKPCSALMTPNLQLSIDGEL-FDDPEMYRRLVGKLNYLTVTRPDIAYSMSVL 306
+ + G +G+KP S P+ +L D +DD YRRLVG+L YL TRPDI + L
Sbjct: 991 LHDSGHIGSKPISTPSDPSTKLHHDTSTPYDDIPAYRRLVGRLLYLNNTRPDITFITQQL 1050
Query: 307 NQFMSSPTVIHWEALGQIFCYLKGNPGHGLLYSNHGHLDIECFSYADWAGLKVNRRSTSG 366
+QF+S+PT+ H A + YLK PG GL + + L ++ FS ADWAG R+S +G
Sbjct: 1051 SQFLSNPTIAHHNAALRTLRYLKSCPGKGLFFPRNSSLTLQGFSDADWAGCLDTRKSVTG 1110
Query: 367 YCVFVSGNLISWRSKKQNVFSRSSVKSEYRA 397
C F+ +LISWR+KKQ SRSS ++EYRA
Sbjct: 1111 QCFFLGNSLISWRTKKQTTVSRSSSEAEYRA 1141
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 157 bits (398), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 117/366 (31%), Positives = 168/366 (45%), Gaps = 64/366 (17%)
Query: 91 STPQSNLNLPIALRKDSVSIPKTVVQALSHPGWCAAMKEEMVALDTNGTWDLVPLPTDKK 150
S P S+ L + + PKT +A W AM+ E+ AL+ GTW ++ P + K
Sbjct: 276 SNPHSHFILSLHAHNE----PKTYTEANKFECWRQAMQVELTALENTGTWKIIDSPPNAK 331
Query: 151 AIGCKWVFTVKVNPDGSVTR---------------------------------------- 170
IGC+W++ +K N D ++ R
Sbjct: 332 PIGCRWIYKIKHNADDTIERYKARLVAKGYNQVEGLDYFDTYSPVAKHTTIRLASRKWYE 391
Query: 171 -LKARLVAKGYSQIYGLDYS-----DTFSTVAKLSFVRLFISIAATFD-WPLHQLDVKNA 223
L + LV GY Q D+S T A L +V I + D + + + N+
Sbjct: 392 KLASLLVNHGYKQA-SADHSLFIKHSTTQFTALLVYVDDIILAGNSLDEFTFIKNILHNS 450
Query: 224 FLHGDLXEEVYM------EQPLGF-VAQG----ESIKEIGKLGTKPCSALMTPNLQL-SI 271
F DL + Y LG + Q + + + G L +KP + P+++L
Sbjct: 451 FKIKDLGQLKYFLGLEVAHSKLGISLCQRKYGLDLLSDTGLLDSKPVATPSDPSIKLYHD 510
Query: 272 DGELFDDPEMYRRLVGKLNYLTVTRPDIAYSMSVLNQFMSSPTVIHWEALGQIFCYLKGN 331
D L+ D YRRLVG+L YL TRPDI + L+QF+S PT H+ A ++ YLK
Sbjct: 511 DSPLYTDIPAYRRLVGRLLYLNATRPDITFITQQLSQFLSKPTQTHYNAALRVLRYLKTC 570
Query: 332 PGHGLLYSNHGHLDIECFSYADWAGLKVNRRSTSGYCVFVSGNLISWRSKKQNVFSRSSV 391
PG GL + I+ +S ADWAG + RRS SG C F+ +LISWR+KKQ SRSS
Sbjct: 571 PGKGLHFPRSSLPYIQGYSDADWAGCRDTRRSISGQCFFLGDSLISWRTKKQLTVSRSSS 630
Query: 392 KSEYRA 397
++EYRA
Sbjct: 631 EAEYRA 636
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 154 bits (390), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 76/144 (52%), Positives = 100/144 (69%), Gaps = 2/144 (1%)
Query: 111 PKTVVQALSHPGWCAAMKEEMVALDTNGTWDLVPLPTDKKAIGCKWVFTVKVNPDGSVTR 170
PK+ +A W AM+ E+ AL+ GTW LV LP + K IGC+W++ VK + DG+V R
Sbjct: 893 PKSYAEASKLDCWKHAMQVELQALEKTGTWKLVDLPPNVKPIGCRWIYKVKFHADGTVER 952
Query: 171 LKARLVAKGYSQIYGLDYSDTFSTVAKLSFVRLFISIAATFDWPLHQLDVKNAFLHGDLX 230
KARLVAKGY+QI GLDY DT+S VAKL+ VRL I++++ +W LHQLDV NAFLHGDL
Sbjct: 953 YKARLVAKGYNQIEGLDYLDTYSPVAKLTTVRLVIALSSINNWHLHQLDVNNAFLHGDLQ 1012
Query: 231 EEVYMEQPLGFVAQGESIKEIGKL 254
E+VYM P G + + ++ KL
Sbjct: 1013 EDVYMMVPPGI--KSSKLNQVCKL 1034
Score = 131 bits (329), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 93/151 (61%), Gaps = 1/151 (0%)
Query: 248 IKEIGKLGTKPCSALMTPNLQLSIDGEL-FDDPEMYRRLVGKLNYLTVTRPDIAYSMSVL 306
+ +IG LG+KP S +++L +D F+D RRLVG+L YL TRPDI + L
Sbjct: 1145 LADIGSLGSKPISTPSDSSIKLHLDSSSPFEDVPACRRLVGRLLYLNNTRPDITFITQQL 1204
Query: 307 NQFMSSPTVIHWEALGQIFCYLKGNPGHGLLYSNHGHLDIECFSYADWAGLKVNRRSTSG 366
+QF+S PT H A ++ YLK PG GL + L+++ FS ADWAG RRS SG
Sbjct: 1205 SQFLSQPTQAHHSAALRVLKYLKSCPGKGLFFPRSSSLNLQGFSDADWAGCIDTRRSISG 1264
Query: 367 YCVFVSGNLISWRSKKQNVFSRSSVKSEYRA 397
C F+ +LISWR+KKQ S+SS ++EYRA
Sbjct: 1265 QCFFLGNSLISWRTKKQITVSKSSSEAEYRA 1295
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 154 bits (388), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 72/133 (54%), Positives = 89/133 (66%)
Query: 111 PKTVVQALSHPGWCAAMKEEMVALDTNGTWDLVPLPTDKKAIGCKWVFTVKVNPDGSVTR 170
P + +A P W AM +E +AL N TW L LP DKK++GC+WV+ VK DGSV R
Sbjct: 336 PNSYEEASMDPAWQKAMTQEFLALHDNNTWTLTNLPKDKKSVGCRWVYKVKHKADGSVER 395
Query: 171 LKARLVAKGYSQIYGLDYSDTFSTVAKLSFVRLFISIAATFDWPLHQLDVKNAFLHGDLX 230
KARLV KGY+Q +G+DY++TFS V K++ VR I AA W +HQLDV NAFLHGDL
Sbjct: 396 YKARLVVKGYTQHHGIDYTETFSPVVKMTTVRTLIVAAAKKQWNIHQLDVNNAFLHGDLH 455
Query: 231 EEVYMEQPLGFVA 243
EEVYM+ P G
Sbjct: 456 EEVYMDIPPGLAT 468
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Query: 248 IKEIGKLGTKPCSALMTPNLQL-SIDGELFDDPEMYRRLVGKLNYLTVTRPDIAYSMSVL 306
+KE P S+ + PN++L S +G++ DDP YR+L+GKLN+LT TR D+AY + +L
Sbjct: 588 LKEFNCDHMAPLSSPLDPNIKLRSHEGKVLDDPTYYRKLIGKLNFLTHTRLDLAYGVQLL 647
Query: 307 NQFMSSPTVIHWEALGQIFCYLKGNPGHGLLYSNHGHLD 345
+Q+M P H A + YLK +P G+ S+ + D
Sbjct: 648 SQYMQDPREPHLHAAFHMLRYLKKDPTLGVFMSSAANFD 686
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 68/130 (52%), Positives = 95/130 (73%)
Query: 111 PKTVVQALSHPGWCAAMKEEMVALDTNGTWDLVPLPTDKKAIGCKWVFTVKVNPDGSVTR 170
PK+ +A W AM+ E+ AL+ GTW ++ LP++ K IGC+W++ VK + DG++ R
Sbjct: 912 PKSYTEANKFECWRQAMQVELTALENTGTWKIIDLPSNAKPIGCRWIYKVKHHADGTIER 971
Query: 171 LKARLVAKGYSQIYGLDYSDTFSTVAKLSFVRLFISIAATFDWPLHQLDVKNAFLHGDLX 230
KARLVAKGY+Q+ GLDY DT+S VAK + +RL +++A+ +W LHQLDV NAFLHGDL
Sbjct: 972 YKARLVAKGYNQVEGLDYFDTYSPVAKHTTIRLVLALASLNNWHLHQLDVNNAFLHGDLQ 1031
Query: 231 EEVYMEQPLG 240
E+VYM+ P G
Sbjct: 1032 EDVYMDIPPG 1041
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 151 bits (382), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 94/258 (36%), Positives = 138/258 (53%), Gaps = 22/258 (8%)
Query: 95 SNLNLPIALRKDSVSIPKTVVQALSHPGWCAAMKEEMVALDTNGTWDLVPLPTDKKAIGC 154
S+ + AL DS + P T +A W AM+ E+ AL+ GTW LV LP + K I C
Sbjct: 868 SSSHCAFALSLDSHTEPTTYAEASKFDCWKQAMQVELSALENTGTWKLVDLPPNVKPIVC 927
Query: 155 KWVFTVKVNPDGSVTRLKARLVAKGYSQIYGLDYSDTFSTVAKLSFVRLFISIAATFDWP 214
+W++ +K + DGS+ R KARLVAKGY+QI GLDY DT+S VAKL+ VR I++A +W
Sbjct: 928 RWIYKIKHHADGSIERYKARLVAKGYNQIEGLDYFDTYSPVAKLTTVRTIIALAYMNNWH 987
Query: 215 LHQLDVKNAFLHGDLXEEVYMEQPLGFVAQGES-----------IKEIGKLGTKPCSALM 263
+HQLDV NAFLHGDL E+VYM P G + +K+ + + ++L+
Sbjct: 988 IHQLDVNNAFLHGDLQEDVYMIVPQGITPSKSNQVCKLIKSLYGLKQASRKWYEKLTSLL 1047
Query: 264 TPN--LQLSIDGELFDDPEMYRRLVGKLNYLTVTRPDIAYSMSVLNQFMSSPTVIH---- 317
+ LQ + D LF ++ L V D+ + + L++F ++H
Sbjct: 1048 VHHHYLQSTSDHSLF-----IKKTYTSFTALLVYVDDVIITGTSLSEFQDIKAILHSALE 1102
Query: 318 WEALGQIFCYLKGNPGHG 335
+ LGQ+ +L H
Sbjct: 1103 IKDLGQLKYFLGLEVAHS 1120
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
Query: 248 IKEIGKLGTKPCSALMTPNLQLSIDG-ELFDDPEMYRRLVGKLNYLTVTRPDIAYSMSVL 306
+ +IG L KP S P+ +L DG F D YRRL+G+L YLT TRP I ++ L
Sbjct: 1136 LTDIGFLAAKPASTPSDPSCKLHADGGPPFSDIPSYRRLIGRLIYLTNTRPYITFATQQL 1195
Query: 307 NQFMSSPTVIHWEALGQIFCYLKGNPGHGLLYSNHGHLDIECFSYADWAGLKVNRRSTSG 366
+QF++SPT H+ A +I YLK +PG GL + L + +S ADWAG +RRS SG
Sbjct: 1196 SQFLNSPTEKHYIAATRILRYLKKSPGQGLFFPRDSSLFLSGYSDADWAGCLDSRRSISG 1255
Query: 367 YCVFVSGNLISWRSKKQNVFSRSSVKSEYRA 397
C F+ +LISW++KKQ SRSS ++EYRA
Sbjct: 1256 QCFFLGHSLISWKTKKQLTVSRSSSEAEYRA 1286
>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
EGN_Mt090430 20090702
Length = 293
Score = 140 bits (354), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 67/114 (58%), Positives = 83/114 (72%)
Query: 127 MKEEMVALDTNGTWDLVPLPTDKKAIGCKWVFTVKVNPDGSVTRLKARLVAKGYSQIYGL 186
M+ E+ AL+ GTW +V LP K IGC+W+F +K N DGS+ R KARLVAKGY+QI GL
Sbjct: 1 MQSEITALEQTGTWKIVDLPPAVKPIGCRWIFKIKHNVDGSIERYKARLVAKGYNQIEGL 60
Query: 187 DYSDTFSTVAKLSFVRLFISIAATFDWPLHQLDVKNAFLHGDLXEEVYMEQPLG 240
DY DT+S VAKL+ VR I++A+ W LHQ DV NAFLHG+L E+VYM P G
Sbjct: 61 DYFDTYSPVAKLTTVRFIIALASINHWHLHQFDVNNAFLHGELQEDVYMIIPPG 114
>IMGA|Medtr4g157500.1 polyprotein-like, putative
chr04_pseudomolecule_IMGAG_V3 39269652-39268814 H
EGN_Mt090430 20090702
Length = 260
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 91/151 (60%), Gaps = 1/151 (0%)
Query: 248 IKEIGKLGTKPCSALMTPNLQLSIDGEL-FDDPEMYRRLVGKLNYLTVTRPDIAYSMSVL 306
+ + G + +KP S +L+L D ++D YRRL+G+L YL TRPDI + L
Sbjct: 76 LSDSGTINSKPVSTSSDASLKLHNDSSPPYEDIPSYRRLIGRLLYLNSTRPDITFITQQL 135
Query: 307 NQFMSSPTVIHWEALGQIFCYLKGNPGHGLLYSNHGHLDIECFSYADWAGLKVNRRSTSG 366
+QF+S PT H A ++ YLK PG GL + + L ++ FS DWAG +RRS SG
Sbjct: 136 SQFLSKPTQTHHNAALRVLKYLKCCPGKGLFFPRNSSLHLQGFSDVDWAGCVDSRRSISG 195
Query: 367 YCVFVSGNLISWRSKKQNVFSRSSVKSEYRA 397
C F+ +LISWR+KKQ SRSS ++EYRA
Sbjct: 196 QCFFIGNSLISWRTKKQTTVSRSSSEAEYRA 226
>IMGA|Medtr6g069750.1 Reverse transcriptase, putative
chr06_pseudomolecule_IMGAG_V3 12976555-12977103 H
EGN_Mt090430 20090702
Length = 149
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 81/143 (56%), Gaps = 28/143 (19%)
Query: 127 MKEEMVALDTNGTWDLVPLPTDKKAIGCKWVFTVKVNPDGSVTRLKARLVAKGYSQIYGL 186
M+ E+ AL+ GTW LV LP + K IGC+W++ +K DGS+ R KARLV KGY+Q+ G
Sbjct: 1 MQAEITALENTGTWKLVDLPPNVKPIGCRWIYKIKHYADGSIQRYKARLVVKGYNQVEGW 60
Query: 187 DYSDTFSTVAKLSFVRL----------------------------FISIAATFDWPLHQL 218
DY DT+S VAKL+ RL I++A+ W +H+L
Sbjct: 61 DYFDTYSPVAKLTTARLVVKGYNQVEGWDYFDTYSLVAKMTTVRTVIALASINQWHIHKL 120
Query: 219 DVKNAFLHGDLXEEVYMEQPLGF 241
D +AFLHGDL E+VYM P G
Sbjct: 121 DANSAFLHGDLQEDVYMLIPQGI 143
>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
H EGN_Mt090430 20090702
Length = 509
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 118/275 (42%), Gaps = 25/275 (9%)
Query: 111 PKTVVQALSHPGWCAAMKEEMVALDTNGTWDLVPLPTDKKAIGCKWVFT----------- 159
P + QA S P W AM E+ AL+ GTW V P + IG KW+F
Sbjct: 153 PSSFKQAQSDPRWQLAMSPELSALEATGTWIFVDPPPNISPIGSKWIFRLNDANNTFLHG 212
Query: 160 -----VKVNPDGSVTRLKARLVAKGYSQIYGLDYSDT--FSTVAKLSFVRLFISIAATFD 212
V ++P V+ + V K +YGL + F + L F+ +A
Sbjct: 213 DLQEDVYMHPPQGVSPPRPGQVCKLLKSLYGLKQASRRWFEKLISLLLTIGFVQASADHS 272
Query: 213 WPLHQLDVKNAFLHGDLXEEVYMEQPLGFVAQGESIKEIGKLGTKPCSALMTP---NLQL 269
+ + L L + + + + + + G C ++ TP L
Sbjct: 273 FLIRASPTSFTAL---LIYVAHSSKGISLCQRKYCLDLLSDAGLTTCKSVSTPLDYACLL 329
Query: 270 SID-GELFDDPEMYRRLVGKLNYLTVTRPDIAYSMSVLNQFMSSPTVIHWEALGQIFCYL 328
ID G FDD YR L+G L YLT TRPDI+++ L+QFM+ P+V H + YL
Sbjct: 330 HIDDGPPFDDVLAYRCLIGCLLYLTTTRPDISFATQQLSQFMAKPSVNHHRTALCVLRYL 389
Query: 329 KGNPGHGLLYSNHGHLDIECFSYADWAGLKVNRRS 363
+ PG GL + + + FS ADW G +RRS
Sbjct: 390 QVCPGRGLFFPRTSEMQLLGFSDADWGGCVDSRRS 424
>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33218578-33217607 H EGN_Mt090430 20090702
Length = 309
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 81/151 (53%), Gaps = 15/151 (9%)
Query: 248 IKEIGKLGTKPCSALMTPNLQLSID-GELFDDPEMYRRLVGKLNYLTVTRPDIAYSMSVL 306
+ E L KP + M N +L +D G DP YRRL+ +L YLT+ P+I YS+ +L
Sbjct: 66 LDECKMLDCKPSTFPMEQNQKLVLDKGPTCSDPSRYRRLISRLIYLTIMHPEITYSVHIL 125
Query: 307 NQFMSSPTVIHWEALGQIFCYLKGNPGHGLLYSNHGHLDIECFSYADWAGLKVNRRSTSG 366
++ YLK +PG G++ L + + +DWA + RRSTSG
Sbjct: 126 TM--------------RVLRYLKSSPGQGIILPKENDLQLVAYCDSDWASCPLTRRSTSG 171
Query: 367 YCVFVSGNLISWRSKKQNVFSRSSVKSEYRA 397
Y + + ISW++KKQ+ S+SS ++EYRA
Sbjct: 172 YLMKLGSAPISWKTKKQSTVSKSSSEAEYRA 202
>IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 41676281-41681462 E
EGN_Mt090430 20090702
Length = 479
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 91 STPQSNLNLPIALRKDSVSIPKTVVQALSHPGWCAAMKEEMVALDTNGTWDLVPLPTDKK 150
S P S+ L + + PKT +A W AM+ E+ AL+ GTW ++ P + K
Sbjct: 369 SNPHSHFILSLHAHNE----PKTYTEANKFECWRQAMQVELTALENTGTWKIIDSPPNAK 424
Query: 151 AIGCKWVFTVKVNPDGSVTRLKARLVAKGYSQI 183
IGC+W++ +K + DG++ R KARLVAKGY+Q+
Sbjct: 425 PIGCRWIYKIKHHADGTIERYKARLVAKGYNQL 457
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Query: 278 DPEMYRRLVGKLNYLTVTRPDIAYSMSVLNQFMSSPTVIHWEALGQIFCYLKGNPGHGLL 337
DP + RRL+G L YL +R DI+YS+ ++++FMS+P H+ A +I Y+ G +G+L
Sbjct: 371 DPTILRRLIGLLRYLCQSRLDISYSVGIVSKFMSNPLKTHFLAAKKIIRYIHGTLQYGIL 430
Query: 338 Y---SNHGHLDIECFSYADWAGLKVNRRSTSGYCVFVSGNLISWRSKKQNVFSRSSVKSE 394
+ L + +S ADW K +RR T+ + + G ISW SKKQ + + SS + E
Sbjct: 431 FPEAQETEQLSMIDYSDADWCRDKRDRRRTTSFLFMLQGAPISWSSKKQPIVALSSCEVE 490
Query: 395 Y 395
Y
Sbjct: 491 Y 491
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 137 NGTWDLVPLPTDKKAIGCKWVFTVKVNPDGSVTRLKARLVAKGYSQIYGLDYSDTFSTVA 196
N TW+L+ L KKAI KWVF +K+NP+G + + KARLVA+ + + G DY++ +
Sbjct: 210 NQTWELIKLTDGKKAIDVKWVFKLKLNPEGKIVKHKARLVARVFLKKEGFDYTEVVFKLN 269
Query: 197 K 197
K
Sbjct: 270 K 270
>IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein,
chr08_pseudomolecule_IMGAG_V3 22106944-22106630 H
EGN_Mt090430 20090702
Length = 104
Score = 72.0 bits (175), Expect = 6e-13, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 52/93 (55%)
Query: 127 MKEEMVALDTNGTWDLVPLPTDKKAIGCKWVFTVKVNPDGSVTRLKARLVAKGYSQIYGL 186
M ++ A+ T W L L DK IGCKW + +K +G++ R K L+ K Y++ G+
Sbjct: 1 MTNKLRAITTKNAWSLTALSKDKVVIGCKWEYRIKHKVNGTIERFKTFLMVKDYTRQEGV 60
Query: 187 DYSDTFSTVAKLSFVRLFISIAATFDWPLHQLD 219
+ DTFS VAK++ V L +SI L QLD
Sbjct: 61 NSLDTFSLVAKITIVCLLLSIVVAKGRILQQLD 93
>IMGA|Medtr3g162300.1 retrotransposon like protein, putative
chr03_pseudomolecule_IMGAG_V3 42355834-42354953 H
EGN_Mt090430 20090702
Length = 58
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%)
Query: 354 WAGLKVNRRSTSGYCVFVSGNLISWRSKKQNVFSRSSVKSEYR 396
WAG + RRST+ YC+F+ N ISW SKKQ SRSS ++EYR
Sbjct: 8 WAGCPLTRRSTTDYCIFLGSNCISWASKKQPTVSRSSTEAEYR 50
>IMGA|Medtr1g102700.1 hypothetical protein
chr01_pseudomolecule_IMGAG_V3 21129202-21129726 H
EGN_Mt090430 20090702
Length = 135
Score = 57.4 bits (137), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 41/64 (64%)
Query: 278 DPEMYRRLVGKLNYLTVTRPDIAYSMSVLNQFMSSPTVIHWEALGQIFCYLKGNPGHGLL 337
D +R L+G L YL TRPD+A S+ +L+QFM + V H A+ ++ Y+KG H +L
Sbjct: 27 DFTQFRMLIGCLRYLCNTRPDLALSIGLLSQFMQNLGVSHMIAVKRMLIYIKGKVEHAIL 86
Query: 338 YSNH 341
+SN+
Sbjct: 87 FSNN 90
>IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
24473881-24473486 H EGN_Mt090430 20090702
Length = 131
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 278 DPEMYRRLVGKLNYLTVTRPDIAYSMSVLNQFMSSPTVIHWEALGQIFCYLKGNPGHGLL 337
DP M+RRL+G L YL +RP I+Y + ++++FMS+P ++ + +I Y+ +G+L
Sbjct: 53 DPTMFRRLIGSLRYLCQSRPGISYLVGIVSRFMSNPLKTNFLSAKKILRYINSTLQYGIL 112
Query: 338 Y---SNHGHLDIECFSYAD 353
+ LD+E +S AD
Sbjct: 113 FLVVQATEQLDMEGYSDAD 131
>IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
27872933-27871392 E EGN_Mt090430 20090702
Length = 256
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 61/138 (44%), Gaps = 28/138 (20%)
Query: 263 MTPNLQLSIDGEL-FDDPEMYRRLVGKLNYLTVTRPDIAYSMSVLNQFMSSPTVIHWEAL 321
M +L+LS DG F DP + R +V L Y + P L
Sbjct: 80 MISDLKLSKDGSTPFSDPTLCRSIVRALQYANLIGP-----------------------L 116
Query: 322 GQIFCYLKGNPGHGLLYSNHGHLDIECFSY--ADWAGLKVNRRSTSGYCVFVSGNLISWR 379
+ +LKG GLL + +Y ADW G + RS CVF+ NLISW
Sbjct: 117 SNVLRHLKGTLSWGLLVRPIPTYPLSILAYCDADW-GSDPDDRSVDA-CVFLGPNLISWW 174
Query: 380 SKKQNVFSRSSVKSEYRA 397
+KKQ V +RSS ++EY +
Sbjct: 175 AKKQAVIARSSTEAEYSS 192
>IMGA|Medtr5g086740.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33353678-33353912 H EGN_Mt090430 20090702
Length = 57
Score = 51.6 bits (122), Expect = 7e-07, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 150 KAIGCKWVFTVKVNPDGSVTRLKARLVAKGYSQIYGLDY 188
K +GC+WV+ +K G + + KARLVAKGY+Q+ G D+
Sbjct: 12 KIVGCRWVYKIKYKASGEIEKYKARLVAKGYTQVEGEDF 50