Jatropha Genome Database
- JcCB0129921.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0129921.10 - phase: 2 /TE
(999 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr2g006470.1 RNA-directed DNA polymerase (reverse transc... 97 5e-20
IMGA|Medtr2g005970.1 RNA-directed DNA polymerase (reverse transc... 97 5e-20
IMGA|Medtr8g053420.1 RNA-directed DNA polymerase (Reverse transc... 92 2e-18
IMGA|Medtr1g089710.1 RNA-directed DNA polymerase (Reverse transc... 89 9e-18
IMGA|Medtr3g061320.1 RNA-directed DNA polymerase (Reverse transc... 84 2e-16
IMGA|Medtr8g109710.1 reverse transcriptase - beet retrotransposo... 82 9e-16
IMGA|Medtr2g005080.1 RNA-directed DNA polymerase (Reverse transc... 82 9e-16
IMGA|Medtr2g117110.1 RNA-directed DNA polymerase (Reverse transc... 80 4e-15
IMGA|Medtr1g010300.1 RNA-directed DNA polymerase (Reverse transc... 80 7e-15
IMGA|Medtr6g070340.1 Endonuclease/exonuclease/phosphatase, putat... 79 8e-15
IMGA|AC233655_32.1 RNA-directed DNA polymerase (Reverse transcri... 76 8e-14
IMGA|Medtr3g030220.1 RNA-directed DNA polymerase (reverse transc... 74 3e-13
IMGA|Medtr3g010330.1 RNA-directed DNA polymerase (reverse transc... 74 4e-13
IMGA|AC233572_22.1 RNA-directed DNA polymerase (Reverse transcri... 74 5e-13
IMGA|Medtr4g079290.1 RNA-directed DNA polymerase (Reverse transc... 72 1e-12
IMGA|Medtr3g097870.1 RNA-directed DNA polymerase (Reverse transc... 72 2e-12
IMGA|AC233685_57.1 RNA-directed DNA polymerase (Reverse transcri... 72 2e-12
IMGA|Medtr3g016900.1 RNA-directed DNA polymerase (Reverse transc... 72 2e-12
IMGA|Medtr6g061920.1 RNA-directed DNA polymerase (Reverse transc... 72 2e-12
IMGA|Medtr8g125530.1 RNA-directed DNA polymerase (Reverse transc... 69 1e-11
IMGA|Medtr7g047570.1 RNA-directed DNA polymerase (Reverse transc... 66 7e-11
IMGA|Medtr3g076330.1 RNA-directed DNA polymerase (reverse transc... 62 1e-09
IMGA|Medtr1g089700.1 reverse transcriptase, putative; 16838-2026... 62 1e-09
IMGA|Medtr5g009520.1 RNA-directed DNA polymerase (reverse transc... 60 5e-09
IMGA|Medtr2g111130.1 RNA-directed DNA polymerase (Reverse transc... 60 5e-09
IMGA|Medtr4g159480.1 Endonuclease/exonuclease/phosphatase chr04_... 59 9e-09
IMGA|AC235488_20.1 RNA-directed DNA polymerase (reverse transcri... 58 2e-08
IMGA|AC235488_13.1 RNA-directed DNA polymerase (reverse transcri... 58 2e-08
IMGA|AC235488_29.1 RNA-directed DNA polymerase (reverse transcri... 58 2e-08
IMGA|Medtr8g021900.1 contains similarity to reverse trancriptase... 58 2e-08
IMGA|Medtr3g162890.1 RNA-directed DNA polymerase (reverse transc... 58 3e-08
IMGA|Medtr3g009340.1 RNA-directed DNA polymerase (Reverse transc... 55 1e-07
IMGA|Medtr7g068060.1 RNA-directed DNA polymerase (Reverse transc... 55 3e-07
IMGA|Medtr3g113540.1 RNA-directed DNA polymerase, related chr03_... 52 2e-06
IMGA|Medtr5g038940.1 RNA-directed DNA polymerase (reverse transc... 51 3e-06
IMGA|Medtr3g138260.1 RNA-directed DNA polymerase (reverse transc... 50 4e-06
IMGA|Medtr2g100360.1 RNA-directed DNA polymerase (reverse transc... 50 6e-06
IMGA|Medtr4g140270.1 RNA-directed DNA polymerase ; Ribonuclease ... 50 6e-06
IMGA|Medtr2g100590.1 Ribonuclease H chr02_pseudomolecule_IMGAG_V... 50 7e-06
IMGA|Medtr2g100610.1 RNA-directed DNA polymerase (reverse transc... 50 8e-06
IMGA|Medtr2g100330.1 RNA-directed DNA polymerase (reverse transc... 50 8e-06
>IMGA|Medtr2g006470.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr02_pseudomolecule_IMGAG_V3
658583-659590 E EGN_Mt090430 20090702
Length = 241
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 111/236 (47%), Gaps = 8/236 (3%)
Query: 199 DWGSXPFRFIDAWRTFPTFKNLVSLWWREAPFEANAF----VISKLKFPKSKLKVXNKEC 254
+WG P R + W F + + V W F+ + + KLK K LK +++
Sbjct: 8 NWGPRPLRMLKCWSKFLGYGDFVREKW--GSFQCQGWGGHVLKEKLKMLKFSLKDWHQQH 65
Query: 255 FGNIEAEYANMDAKLDAFDRIYEVRAFSQEELIEYKTLSANFWRTQKAQDSYWKQVSRIQ 314
N++++ + ++ D E+ A ++EL E L N +K Q+ Q SR+
Sbjct: 66 VKNLDSKIMAVKNQISTLDSKAELSALPEDELKELHDLFVNLHSMEKVQNIINWQKSRMN 125
Query: 315 WGKLGDRNTRLFQVVASKRKTSNYIASLTHNGESLSSPSKIKFAIFDHY-KNFFGSTPKG 373
W K GD N++ V S RK N I + +G ++ + ++ +I H+ NF + +
Sbjct: 126 WLKEGDANSKKIHGVMSGRKRHNTINMVLVDGANVEGANNVRSSIITHFLTNFKLLSARW 185
Query: 374 PLNTQGLSLKSLSEADSRSLKTPFTTEEVKIAVWSCVGSKSPGLDGFDFTFFKKLW 429
P GL + LS A++ SL F+ EVK A+W C KS G DG F F K+ W
Sbjct: 186 P-GVGGLQFRQLSGAEAGSLIKLFSPVEVKQAIWDCDRFKSLGPDGVSFDFIKEFW 240
>IMGA|Medtr2g005970.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr02_pseudomolecule_IMGAG_V3
490055-489048 E EGN_Mt090430 20090702
Length = 241
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 111/236 (47%), Gaps = 8/236 (3%)
Query: 199 DWGSXPFRFIDAWRTFPTFKNLVSLWWREAPFEANAF----VISKLKFPKSKLKVXNKEC 254
+WG P R + W F + + V W F+ + + KLK K LK +++
Sbjct: 8 NWGPRPLRMLKCWSKFLGYGDFVREKW--GSFQCQGWGGHVLKEKLKMLKFSLKDWHQQH 65
Query: 255 FGNIEAEYANMDAKLDAFDRIYEVRAFSQEELIEYKTLSANFWRTQKAQDSYWKQVSRIQ 314
N++++ + ++ D E+ A ++EL E L N +K Q+ Q SR+
Sbjct: 66 VKNLDSKIMAVKNQISTLDSKAELSALPEDELKELHDLFVNLHSMEKVQNIINWQKSRMN 125
Query: 315 WGKLGDRNTRLFQVVASKRKTSNYIASLTHNGESLSSPSKIKFAIFDHY-KNFFGSTPKG 373
W K GD N++ V S RK N I + +G ++ + ++ +I H+ NF + +
Sbjct: 126 WLKEGDANSKKIHGVMSGRKRHNTINMVLVDGANVEGANNVRSSIITHFLTNFKLLSARW 185
Query: 374 PLNTQGLSLKSLSEADSRSLKTPFTTEEVKIAVWSCVGSKSPGLDGFDFTFFKKLW 429
P GL + LS A++ SL F+ EVK A+W C KS G DG F F K+ W
Sbjct: 186 P-GVGGLQFRQLSGAEAGSLIKLFSPVEVKQAIWDCDRFKSLGPDGVSFDFIKEFW 240
>IMGA|Medtr8g053420.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr08_pseudomolecule_IMGAG_V3
12119249-12120974 H EGN_Mt090430 20090702
Length = 477
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 130/267 (48%), Gaps = 9/267 (3%)
Query: 595 QPKKGLRQGCLLSPFHFILSAEGLNSLFIKASFLGLFKGFPCAIGDNDS-ITHLKFVDDT 653
+P LRQG LSP+ F++ E L+ + ++A +K P + N ++HL F DD
Sbjct: 16 RPIGRLRQGDPLSPYLFVMCMENLSHMILEAVDDSRWK--PVTLSRNGPPLSHLFFADDV 73
Query: 654 LLFCESSMKCILNVKRILHCFELLSGVKINFHXXXXXXXXXXXXPYQVLLTILIAPNLNC 713
LLF ++++ + ++ + F SG+K+N ++ + + N
Sbjct: 74 LLFSKATVSQVRVMEDVFTKFAGTSGLKVNTSKSRAFFSNVVTHS-KINTMVSVTGIHNT 132
Query: 714 SLKDWPIKYLALLLGSSPRRKTFWEPLIQCIKSRLASXEGKLLSRAGILVLIKSVLHSLP 773
S D KYL + ++ ++ LI ++S LAS + KLL++AG L L KSVL+++P
Sbjct: 133 SSLD---KYLGFPIFHGRMKRVDYDFLIDKVQSCLASWKNKLLNKAGRLTLAKSVLNAIP 189
Query: 774 TYSLSL-FVFRQVXLQXLKNSRNIFWNASVDKKALATISXDLIKLQRRMGGLGIGFILEK 832
TY + + + + + Q K +R W + D K + +S D I + +GGLG+
Sbjct: 190 TYYMQISWTPQSICNQLDKMTRKFIWKGT-DGKGVHLVSWDKITRPKSLGGLGVRVARNA 248
Query: 833 NYALLFKWVCRFASNEESLWKSFITKK 859
N ALL K V +N W ++ K
Sbjct: 249 NTALLGKLVWDIHTNANKSWVQILSNK 275
>IMGA|Medtr1g089710.1 RNA-directed DNA polymerase (Reverse
transcriptase); Histone H2B; Histone-fold;
Polynucleotidyl transferase, Ribonuclease H fold
chr01_pseudomolecule_IMGAG_V3 17931605-17934389 E
EGN_Mt090430 20090702
Length = 802
Score = 89.4 bits (220), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 124/269 (46%), Gaps = 14/269 (5%)
Query: 588 GSPSCEFQPKKGLRQGCLLSPFHFILSAEGLNSLFIKASFLGLFKGFPCAIGDNDSITHL 647
G PS +F P++GLRQG LSP+ FIL AE L+ L K G F G A I+HL
Sbjct: 26 GKPSNKFYPQRGLRQGDPLSPYLFILCAEVLSGLLTKGLADGKFHGIQIA-PTAPPISHL 84
Query: 648 KFVDDTLLFCESSMKCILNVKRILHCFELLSGVKINFHXXXX----XXXXXXXXPYQVLL 703
F DD+L FC S K + L ++ +SG K+N +QV L
Sbjct: 85 FFADDSLFFCRSEPKEANFLMDTLQLYQDMSGQKVNLDKSKMVFNPSLREDIKKDFQVQL 144
Query: 704 TILIAPNLNCSLKDWPIKYLALLLGSSPRRKTFWEPLIQCIKSRLASXEGKLLSRAGILV 763
I I+ + KYL L + + ++ + ++ + + LS AG V
Sbjct: 145 PINISNKIT--------KYLGLPTQFGRSKVQDFNYIMDKVIKKMKGWKERNLSFAGRSV 196
Query: 764 LIKSVLHSLPTYSLSLFVFRQVXLQXLKNSRNIF-WNASVDKKALATISXDLIKLQRRMG 822
LIK+V+ ++ + +S F+ Q ++ + F W ++ D K + + D + G
Sbjct: 197 LIKAVVQAIHVFVMSCFLLPQETCDNIERAVCKFWWGSNGDNKKIHWVKKDKVLRSTIDG 256
Query: 823 GLGIGFILEKNYALLFKWVCRFASNEESL 851
GLG + + N +L K + R +N+++L
Sbjct: 257 GLGFRNLRDFNMVMLAKQIWRLHTNQQAL 285
>IMGA|Medtr3g061320.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
13555953-13554878 H EGN_Mt090430 20090702
Length = 318
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 63/121 (52%)
Query: 309 QVSRIQWGKLGDRNTRLFQVVASKRKTSNYIASLTHNGESLSSPSKIKFAIFDHYKNFFG 368
Q SR+ W K GD NT+ F + S R+ +N I SL+ NG + I+ +F+H+ + F
Sbjct: 4 QKSRLLWLKKGDANTKFFHSIMSSRRRANSIFSLSANGTIVEGVEGIRGLVFNHFSSHFK 63
Query: 369 STPKGPLNTQGLSLKSLSEADSRSLKTPFTTEEVKIAVWSCVGSKSPGLDGFDFTFFKKL 428
S + + L+ L+ L PF+ +EVK AVW C KSPG DG + F K
Sbjct: 64 SVAAERPSIENLNFNILNLGQCGELTKPFSIDEVKQAVWDCDSFKSPGPDGVNMGFVKDF 123
Query: 429 W 429
W
Sbjct: 124 W 124
>IMGA|Medtr8g109710.1 reverse transcriptase - beet retrotransposon,
putative chr08_pseudomolecule_IMGAG_V3 24674546-24673629
H EGN_Mt090430 20090702
Length = 305
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 100/213 (46%), Gaps = 4/213 (1%)
Query: 180 GLPKVLSDHCPIILXKNKQDWGSXPFRFIDAWRTFPTFKNLVSLWW-REAPFEANAFVIS 238
LP+ +SDH P++L + Q WG PFRF + W + F +V W R P E A +S
Sbjct: 77 ALPRDVSDHSPVVLRYSSQSWGPKPFRFNNFWLSHRDFGEVVQRSWNRSRPPEWMAVRLS 136
Query: 239 -KLKFPKSKLKVXNKECFGNIEAEYANMDAKLDAFD-RIYEVRAFSQEELIEYKTLSANF 296
KLK K LK + + FG +E + L+ + R+ S + ++K +
Sbjct: 137 TKLKTLKGDLKYWHSQAFGRLEGRIEELVEALNLLELRVERSPLSSADSEAKFKGFH-DL 195
Query: 297 WRTQKAQDSYWKQVSRIQWGKLGDRNTRLFQVVASKRKTSNYIASLTHNGESLSSPSKIK 356
W +A++S Q S +W + GD N+ F + R+ N I +L + S S+++
Sbjct: 196 WALLRARESQLFQQSCSRWLREGDANSAYFHSNINLRRRRNSILALRVGSRWVESVSEVR 255
Query: 357 FAIFDHYKNFFGSTPKGPLNTQGLSLKSLSEAD 389
I D+++N F G++ S+SE D
Sbjct: 256 AEIVDYFRNHFSEALMDRSTLDGVAFASISEDD 288
>IMGA|Medtr2g005080.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr02_pseudomolecule_IMGAG_V3 86385-88912
E EGN_Mt090430 20090702
Length = 566
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 114/257 (44%), Gaps = 6/257 (2%)
Query: 596 PKKGLRQGCLLSPFHFILSAEGLNSLFIKASFLGLFKGFPCAIGDNDSITHLKFVDDTLL 655
P +GLRQG LSP+ FIL EGL++L K G G G ++HL F D+ L
Sbjct: 9 PGRGLRQGDPLSPYLFILVVEGLSTLIHKEVNRGDIHGVKVCRG-APVVSHLLFADNCFL 67
Query: 656 FCESSMKCILNVKRILHCFELLSGVKINFHXXXXXXXXXXXXPYQVLLTILIAPNLNCSL 715
FC +++ + IL +E SG +IN Q L+ +I
Sbjct: 68 FCRANVVEAQRLLTILKTYEAASGQEINLSKSEVFFSRNMSGAAQEDLSRIIGVRHVMGT 127
Query: 716 KDWPIKYLALLLGSSPRRKTFWEPLIQCIKSRLASXEGKLLSRAGILVLIKSVLHSLPTY 775
KYL L + + + + I R+ G+ LS+AG V+IKSVL S+P+Y
Sbjct: 128 G----KYLGLPSMIDRDKWSVFSFIKDSIWKRINVWRGRALSKAGKEVMIKSVLQSIPSY 183
Query: 776 SLSLFVFRQVXLQXLKNSRNIF-WNASVDKKALATISXDLIKLQRRMGGLGIGFILEKNY 834
+S+++ + ++ N F W + + + ++ + + + GG+G N
Sbjct: 184 IMSIYLLPSSVIDDIEKMVNAFWWGGRSNNRGIKWMAWEHMACPKEFGGMGFRNFKAFNI 243
Query: 835 ALLFKWVCRFASNEESL 851
A++ K S ESL
Sbjct: 244 AMVAKQGWSLLSTPESL 260
>IMGA|Medtr2g117110.1 RNA-directed DNA polymerase (Reverse
transcriptase); Hemopexin; Polynucleotidyl transferase,
Ribonuclease H fold chr02_pseudomolecule_IMGAG_V3
27457173-27452820 H EGN_Mt090430 20090702
Length = 1147
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 125/260 (48%), Gaps = 11/260 (4%)
Query: 596 PKKGLRQGCLLSPFHFILSAEGLNSLFIKASFLGLFKGFPCAIGDNDSITHLKFVDDTLL 655
P +GLRQG LSP+ FIL AEG+++L +A + G +++HL F DD+ L
Sbjct: 450 PGRGLRQGDPLSPYLFILCAEGMSTLIKQAERNNILHGVKVC-KRAPTVSHLLFADDSFL 508
Query: 656 FCESSMKCILNVKRILHCFELLSGVKINFHXXXXXXXXXXXXPYQVLLTILIAPNLNCSL 715
F ++ +K IL + S IN + L+ ++ + +
Sbjct: 509 FFRANENETRALKDILDTYANASDQLINMQKSEIYFSRNVPVTKKNTLSNMLWVSEGIGI 568
Query: 716 KDWPIKYLAL--LLGSSPRRKTFWEPLIQCIKSRLASXEGKLLSRAGILVLIKSVLHSLP 773
+ KYL L ++G S +K+ + + I +R++ K+LS+AG VLIKSV ++P
Sbjct: 569 R----KYLGLPSMIGRS--KKSIFNYIKDRIWNRISGLSSKMLSQAGKEVLIKSVAQAIP 622
Query: 774 TYSLSLFVFRQVXLQXLKNSRNIFW--NASVDKKALATISXDLIKLQRRMGGLGIGFILE 831
+Y +S+F+ ++ N FW + + + +S + + +++ GG+G I
Sbjct: 623 SYCMSVFLLPHSIADDIEKMLNSFWWGMKNEGRGGIRWMSWERLTMRKEWGGMGFRHIHG 682
Query: 832 KNYALLFKWVCRFASNEESL 851
+ A+ K F +N +++
Sbjct: 683 FDLAMSGKQCWNFLTNPDAM 702
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 106/249 (42%), Gaps = 44/249 (17%)
Query: 186 SDHCPIILXKNKQ--DWGSXPFRFIDAWRTFPTFKNLVSLWWREAPFEANAFVISKLKFP 243
SDH PI+L ++ D+ FRF ++W P ++V W + N +I++L+
Sbjct: 76 SDHSPILLCTEQKFYDFKKRQFRFENSWLVEPELDSVVHDGWFH---DVNEPMITRLQHC 132
Query: 244 KSKLKVXNKECFGNIEAEYANMDAKLDAFDRIYEVRAFSQEELI-EYKTLSANFWRTQKA 302
+L + ++ Y K D I E++ E E L
Sbjct: 133 TEELDQWGR----SLRKRYKEDIQKCK--DIIEELQGLGDVETDGEIVLLKEKLNLLLIQ 186
Query: 303 QDSYWKQVSRIQWGKLGDRNTRLFQVVASKRKTSNYIASLTHNGESLSSPSKIKFAIFDH 362
+D++WKQ ++I W K GD N + F A+ RK N I L ++ ++++
Sbjct: 187 EDTFWKQRAKIFWMKDGDMNAKFFHAAATSRKQKNKITKLFNDEDAVA------------ 234
Query: 363 YKNFFGSTPKGPLNTQGLSLKSLSEADSRSLKTPFTTEEVKIAVWSCVGSKSPGLDGFDF 422
+ L+E D++ L PFT EE + A++ K+PG DG +
Sbjct: 235 --------------------ECLNEEDNQFLIAPFTDEEFRDAIFQMQSDKAPGPDGLNP 274
Query: 423 TFFKKLWDI 431
TF+K+ W +
Sbjct: 275 TFYKRFWTL 283
>IMGA|Medtr1g010300.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr01_pseudomolecule_IMGAG_V3 1684225-1680716 E
EGN_Mt090430 20090702
Length = 659
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 117/268 (43%), Gaps = 12/268 (4%)
Query: 594 FQPKKGLRQGCLLSPFHFILSAEGLNSLFIKASFLGLFKGFPCAIGDND-SITHLKFVDD 652
F+PK+GLRQG LSP+ F+L E L+ + ++ P I + S +HL F DD
Sbjct: 21 FKPKRGLRQGDPLSPYLFVLCMEKLSLMIQNQVTNNTWR--PIKISRHGPSFSHLLFADD 78
Query: 653 TLLFCESSMKCILNVKRILHCFELLSGVKINFHXXXXXXXXXXXXPYQVLLTILIAPNLN 712
LLF E+ + V+ +L F SG+KIN Q L+ N
Sbjct: 79 CLLFTEAKSSQVKVVRNVLQKFCFASGLKINIQKLKFMSSSNVSRHKQHKFESLLQFNHT 138
Query: 713 CSLKDWPIKYLALLLGSSPRRKTFWEPLIQCIKSRLASXEGKLLSRAGILVLIKSVLHSL 772
L KYL + S + + + ++ I RLA + LLSR G + L KSV+ ++
Sbjct: 139 SHLG----KYLGFPMLSGRIKNSDFNFILDKINGRLAGWKMNLLSRPGRITLAKSVVTAM 194
Query: 773 PTYSL-SLFVFRQVXLQXLKNSRNIFWNASVDKKALATISXDLIKLQRRMGGLGIGFILE 831
P Y++ +L++ + R+ W K ++ + + + GGLGI
Sbjct: 195 PIYTMQNLWLPSGICENIDATVRSFIWG----KNYCHWVNWKNLTMPKSCGGLGIRTARN 250
Query: 832 KNYALLFKWVCRFASNEESLWKSFITKK 859
N +LL K + E LW + K
Sbjct: 251 SNISLLGKHIWDILHQPEKLWVQMLRHK 278
>IMGA|Medtr6g070340.1 Endonuclease/exonuclease/phosphatase, putative
chr06_pseudomolecule_IMGAG_V3 13241205-13239102 H
EGN_Mt090430 20090702
Length = 201
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 57/117 (48%)
Query: 313 IQWGKLGDRNTRLFQVVASKRKTSNYIASLTHNGESLSSPSKIKFAIFDHYKNFFGSTPK 372
+ W K GD NT+ F + + R+ N I L NG + I+ +F+H+KN F S
Sbjct: 1 MHWLKDGDANTKFFHDILAARRRGNSIVKLDDNGSEVQGVENIRGVVFNHFKNHFRSVMV 60
Query: 373 GPLNTQGLSLKSLSEADSRSLKTPFTTEEVKIAVWSCVGSKSPGLDGFDFTFFKKLW 429
L + L+ + ++ L PF+ EEVK VW C KSP DG + F + W
Sbjct: 61 DRLGAENLNFNMIGMFETSELVKPFSLEEVKQVVWDCDTFKSPWPDGINLGFLTEFW 117
>IMGA|AC233655_32.1 RNA-directed DNA polymerase (Reverse
transcriptase); Endonuclease/exonuclease/phosphatase
AC233655.2 202219-200303 H EGN_Mt090430 20090702
Length = 567
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 107/246 (43%), Gaps = 13/246 (5%)
Query: 186 SDHCPIILXKNKQ--DWGSXPFRFIDAWRTFPTFKNLVSLWWREAPFEANAFVISKLKFP 243
SDH PI+L + + ++ FRF +AW P ++VS W + ++ +L
Sbjct: 158 SDHSPILLNTDPKVYEYKRRQFRFENAWLVEPELPSIVSDGWMRGQADP---LLDRLALC 214
Query: 244 KSKLKVXNKECFGNIEAEYANMDAKLDAFDRIYEVRAFSQEEL-IEYKTLSANFWRTQKA 302
+L + ++ Y K RI E++ S E IE +L
Sbjct: 215 TEELDQWGR----SLRRRYKEDIKKCKK--RIAELQTLSNNEADIEVVSLKERLNLLLIQ 268
Query: 303 QDSYWKQVSRIQWGKLGDRNTRLFQVVASKRKTSNYIASLTHNGES-LSSPSKIKFAIFD 361
++++WKQ ++ W + GD N++ F A+ RK N I L + + +++ I +
Sbjct: 269 EETFWKQRAKSFWLRDGDMNSKFFHAAATSRKQRNKITKLMKDDNTKVTTQEDICTLSLE 328
Query: 362 HYKNFFGSTPKGPLNTQGLSLKSLSEADSRSLKTPFTTEEVKIAVWSCVGSKSPGLDGFD 421
++ N F TP ++ D+ L TPF +E + V+ K+PG DG +
Sbjct: 329 YFSNLFAPTPCNTHPVLQAVAPCINAEDNNLLTTPFRDDEFRDVVFQMHSDKAPGSDGLN 388
Query: 422 FTFFKK 427
F+K+
Sbjct: 389 PAFYKR 394
>IMGA|Medtr3g030220.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
8135533-8133995 H EGN_Mt090430 20090702
Length = 321
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 59/104 (56%), Gaps = 5/104 (4%)
Query: 677 LSGVKINFHXXXXXXXXXXXXPYQVLLTILIAPNLNCSLKDWPIKYLALLLGSSPRRKTF 736
+SG+K+NFH P+ L A LNC + +PI Y+ LL+ RR F
Sbjct: 1 MSGLKVNFHKSALVGINV---PHSWLREA--ANVLNCKIGSFPILYMGLLVEGDSRRLHF 55
Query: 737 WEPLIQCIKSRLASXEGKLLSRAGILVLIKSVLHSLPTYSLSLF 780
W P++ CIKSRL+ + K LS G LVL+K VL SLP Y++S F
Sbjct: 56 WNPVVNCIKSRLSCWKSKHLSFGGRLVLLKFVLTSLPVYAISFF 99
>IMGA|Medtr3g010330.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
1741750-1742223 H EGN_Mt090430 20090702
Length = 143
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 5/131 (3%)
Query: 650 VDDTLLFCESSMKCILNVKRILHCFELLSGVKINFHXXXXXXXXXXXXPYQVLLTILIAP 709
VD+TL+ E S + ++ LH F +K+NFH + A
Sbjct: 15 VDNTLILVEKSWANVRAMRAALHLFASTCELKVNFHKSELVNVNVNRS-----WLLEAAS 69
Query: 710 NLNCSLKDWPIKYLALLLGSSPRRKTFWEPLIQCIKSRLASXEGKLLSRAGILVLIKSVL 769
LNC + PI YL L +G +PRR F +P++ IKS L+S + + LS G LVL+KS++
Sbjct: 70 VLNCKVNTLPIMYLGLPVGGNPRRLNFRDPVVDRIKSHLSSWKSRHLSFGGHLVLLKSIM 129
Query: 770 HSLPTYSLSLF 780
SL Y+LS F
Sbjct: 130 TSLFVYALSFF 140
>IMGA|AC233572_22.1 RNA-directed DNA polymerase (Reverse
transcriptase) AC233572.2 97249-98280 H EGN_Mt090430
20090702
Length = 258
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 83/190 (43%), Gaps = 40/190 (21%)
Query: 596 PKKGLRQGCLLSPFHFILSAEGLNSLFIKASFLGLFKGFPCAIGDNDSITHLKFVDDTLL 655
PK+GLRQG LSP+ FI+ EGL++ KA G G +THL F DD +
Sbjct: 37 PKRGLRQGDPLSPYLFIICVEGLSAQLKKAEARVDIHGVKLCRGAL-ILTHLLFADDCFI 95
Query: 656 FCESSMKCILNVKRILHCFELLSGVKINFHXXXXXXXXXXXXPYQVLLTILIAPNL---N 712
FC+++M+ + +K IL +E +S INF P + N
Sbjct: 96 FCKANMQESIKLKEILQSYEAMSEQAINFR----------------------KPEIFSKN 133
Query: 713 CSLKDWPIKYLALLLGSSPRRKTFWEPLIQCIKSRLASXEGKLLSRAGILVLIKSVLHSL 772
S D + L R W + Q GK LS+AG VLIK V ++
Sbjct: 134 TSEADRSQENFGYL------RDGVWRKIQQWF--------GKHLSKAGREVLIKFVTQAI 179
Query: 773 PTYSLSLFVF 782
PTY +S F+
Sbjct: 180 PTYCMSTFLL 189
>IMGA|Medtr4g079290.1 RNA-directed DNA polymerase (Reverse
transcriptase); Polynucleotidyl transferase,
Ribonuclease H fold chr04_pseudomolecule_IMGAG_V3
15868030-15871357 E EGN_Mt090430 20090702
Length = 845
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
Query: 303 QDSYWKQVSRIQWGKLGDRNTRLFQVVASKRKTSNYIASLTHN-GESLSSPSKIKFAIFD 361
+D YW+Q ++ W + GD NT+ F A+ RK N I L ++ G ++ + +
Sbjct: 65 EDKYWRQRAKTHWYRDGDLNTKFFHASATSRKKVNRINFLDNDEGVRIADEQGMSQVAKE 124
Query: 362 HYKNFFGSTPKGPLNTQGLSLKSLSEADSRSLKTPFTTEEVKIAVWSCVGSKSPGLDGFD 421
+++ F + + K +S D+ L PF EE K A++S K PG DGF+
Sbjct: 125 YFETLFLESNSTRAPVVNIIEKVVSGDDNIMLTAPFQAEEFKDAMFSMHPDKCPGPDGFN 184
Query: 422 FTFFKKLWDISL 433
FF++LW I+L
Sbjct: 185 PGFFQQLWPIAL 196
>IMGA|Medtr3g097870.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
23554745-23554236 H EGN_Mt090430 20090702
Length = 169
Score = 71.6 bits (174), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/90 (46%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 596 PKKGLRQGCLLSPFHFILSAEGLNSLFIKASFLGLFKGFPCAIGDNDSITHLKFVDDTLL 655
PK+GLRQG LSP+ FIL AEGL++L +A G G G +THL F D L
Sbjct: 24 PKRGLRQGDPLSPYLFILCAEGLSALLRRAETRGDIHGVKVCRG-APLLTHLLFAYDCFL 82
Query: 656 FCESS-MKCILNVKRILHCFELLSGVKINF 684
FC SS MKC +K +LH +E ++G I+F
Sbjct: 83 FCRSSIMKCT-KIKEVLHVYESVTGQAIHF 111
>IMGA|AC233685_57.1 RNA-directed DNA polymerase (Reverse
transcriptase) AC233685.2 242381-241350 H EGN_Mt090430
20090702
Length = 268
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 82/188 (43%), Gaps = 26/188 (13%)
Query: 596 PKKGLRQGCLLSPFHFILSAEGLNSLFIKASFLGLFKGFPCAIGDNDSITHLKFVDDTLL 655
PK+GLRQG LSP+ FI+ EGL++ KA G G +THL F DD +
Sbjct: 37 PKRGLRQGDPLSPYLFIICVEGLSAQLKKAEARVDIHGVKLCRGAL-ILTHLLFADDCFI 95
Query: 656 FCESSMKCILNVKRILHCFELLSGVKINFHXXXXXXXXXXXXPY-QVLLTILIAPNLNCS 714
FC+++M+ + +K IL +E +S INF Q ++ N
Sbjct: 96 FCKANMQESIKLKEILQSYEAMSEQAINFRKPEIFSKNTSEADRSQSKMSYRYKKREN-- 153
Query: 715 LKDWPIKYLALLLGSSPRRKTFWEPLIQCIKSRLASXEGKLLSRAGILVLIKSVLHSLPT 774
YL R W + Q GK LS+AG VLIK V ++PT
Sbjct: 154 -----FGYL---------RDGVWRKIQQWF--------GKHLSKAGREVLIKFVTQAIPT 191
Query: 775 YSLSLFVF 782
Y +S F+
Sbjct: 192 YCMSTFLL 199
>IMGA|Medtr3g016900.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
3397609-3394716 E EGN_Mt090430 20090702
Length = 703
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 119/269 (44%), Gaps = 44/269 (16%)
Query: 588 GSPSCEFQPKKGLRQGCLLSPFHFILSAEGLNSLFIKASFLGLFKGFPCAIGDNDSITHL 647
G P+ F+PK+G+RQG LSP+ FIL A+ L+ L K G A + +++HL
Sbjct: 290 GVPTPVFKPKRGIRQGDPLSPYLFILCADVLSGLITKYHDDNKLHGISIA-NNAPTLSHL 348
Query: 648 KFVDDTLLFCESSMKCILNVKRILHCFELLSGVKINFHXXX----XXXXXXXXXPYQVLL 703
F DD+++FC ++ N+ I ++ +SG KIN + +Q +
Sbjct: 349 TFADDSMVFCRANKSEAQNLMEIFADYQSISGQKINLNKSEMVFNSNLNQTIQTEFQQYM 408
Query: 704 TILIAPNLNCSLKDWPIKYLALLLGSSPRRKTFWEPLIQCIKSRLAS-XEGKLLSRAGIL 762
TI I N++ KYL L Q +K+++ + + LS +
Sbjct: 409 TIKITNNID--------KYLGL--------------PTQVLKNQIFNFIMERNLSFSSRG 446
Query: 763 VLIKSVLHSLPTYSLSLFVFRQVXLQXLKNSRNIFWNASVDKKALATISXDLIKLQRRMG 822
VLI++V+ ++P+Y LS+ + W S +K+ + S +++ + G
Sbjct: 447 VLIRAVIQAIPSY-LSV---------------DFGWGGSEEKRRIHWKSKEVLFKSKFNG 490
Query: 823 GLGIGFILEKNYALLFKWVCRFASNEESL 851
G G + N AL K R ++L
Sbjct: 491 GQGFRTMHHFNEALFAKQAWRLIHQPQTL 519
>IMGA|Medtr6g061920.1 RNA-directed DNA polymerase (Reverse
transcriptase); Deoxyribonuclease I
chr06_pseudomolecule_IMGAG_V3 11215607-11213885 H
EGN_Mt090430 20090702
Length = 405
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%)
Query: 309 QVSRIQWGKLGDRNTRLFQVVASKRKTSNYIASLTHNGESLSSPSKIKFAIFDHYKNFFG 368
Q SR+ W + D N++ F + S R+ N + + +G + + A+F+H+++ +
Sbjct: 144 QKSRLNWLREDDANSKFFHGIMSARRRGNALLFIEVDGTRFEGVTNFRGAVFNHFQHHYK 203
Query: 369 STPKGPLNTQGLSLKSLSEADSRSLKTPFTTEEVKIAVWSCVGSKSPGLDGFDFTFFKKL 428
S + ++ K++ D SL F E+K AVWSC KSPG +G F K
Sbjct: 204 SIYITRPSADDMAFKTMYVEDGGSLTGLFLEGEIKHAVWSCDSYKSPGANGISLNFIKDF 263
Query: 429 WDI 431
W +
Sbjct: 264 WGL 266
>IMGA|Medtr8g125530.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr08_pseudomolecule_IMGAG_V3
29296065-29298854 H EGN_Mt090430 20090702
Length = 693
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 119/271 (43%), Gaps = 29/271 (10%)
Query: 596 PKKGLRQGCLLSPFHFILSAEGLNSLFIKASFLGLFKGFPCAIGDNDSITHLKFVDDTLL 655
P +GLRQG LSP+ FIL AEGL++L +A G G ++ I+HL F +D L
Sbjct: 193 PGEGLRQGDPLSPYLFILCAEGLSALIHQAERRGDIHGISICT-NSPIISHLLFANDCFL 251
Query: 656 FCESSMKCILNVKRILHCFELLSGVKINFHXXXXXXXXXXXXPYQVLLTILIAPNLNCSL 715
F + + + +K IL +E VK + LL L P+L +L
Sbjct: 252 FFMAEEREVGVMKNILETYEKALLVK---QLAFRNMKFIIVGVFPTLLKTLSLPSLVSAL 308
Query: 716 KDWPIKYLALLLGSSPRRKTFWEPLIQCIKSRLASXEGKLLSRAGILVLIKSVLHSLPTY 775
WE + I ++ K LS+A VL+KSVL S+P+Y
Sbjct: 309 --------------------LWE--LDRIWHKINCWSSKCLSKAEREVLMKSVLQSIPSY 346
Query: 776 SLSLFVFRQVXLQXLKNSRNIFW--NASVDKKALATISXDLIKLQRRMGGLGIGFILEKN 833
+S+++ + ++ N FW + +K L +S + + + GG+G + +
Sbjct: 347 IMSVYLLPNKLVDAIEKIINAFWWGHGGTTRKGLHWLSWKRLSVHKNYGGMGFKDLTSFH 406
Query: 834 YALL-FKWVCRFASNEESLWKSFITKKVSLS 863
A+L +W + ++ S++ SLS
Sbjct: 407 VAMLGVRWRIGYGASIPLFGASWLKDGCSLS 437
>IMGA|Medtr7g047570.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr07_pseudomolecule_IMGAG_V3
11971058-11973594 E EGN_Mt090430 20090702
Length = 628
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 89/185 (48%), Gaps = 15/185 (8%)
Query: 594 FQPKKGLRQGCLLSPFHFILSAEGLNSLFIKA----SFLGLFKGFPCAIGDNDSITHLKF 649
F PKKGLRQG +SP+ F++ + L+ L +A +L L G + I+HL F
Sbjct: 418 FTPKKGLRQGDPISPYLFVICMDKLSHLISEAIDKGDWLDLKTGRTGPM-----ISHLMF 472
Query: 650 VDDTLLFCESSMKCILNVKRILHCFELLSGVKINFHXXXXXXXXXXXXPYQVLLTILIAP 709
DD LLF +++ + V +L+ F L G I+ + LL +
Sbjct: 473 ADDLLLFGQATDSQMRGVMEVLNKFCHLLGQSISIQKTTIFFSSNVYRVTRRLLVDISGF 532
Query: 710 NLNCSLKDWPIKYLAL-LLGSSPRRKTFWEPLIQCIKSRLASXEGKLLSRAGILVLIKSV 768
L KYL + L G +PRRK F + L+ ++++L + + S AG + L KSV
Sbjct: 533 RETTELG----KYLGVPLTGKAPRRKDF-QYLVNEVRNKLTAWKSNQFSFAGRVTLAKSV 587
Query: 769 LHSLP 773
+ ++P
Sbjct: 588 IEAIP 592
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 2/144 (1%)
Query: 290 KTLSANFWRTQKAQDSYWKQVSRIQWGKLGDRNTRLFQVVASKRKTSNYIASLTH-NGES 348
+ L R + ++ W Q SR +W GDRNTR + + +R+ N I L + +G
Sbjct: 126 RKLQKEMSRIFQQEELMWFQRSRAKWLVDGDRNTRYYHLKTVQRRRRNKIIMLRNVDGHW 185
Query: 349 LSSPSKIKFAIFDHYKNFFGSTPKGPLNTQ-GLSLKSLSEADSRSLKTPFTTEEVKIAVW 407
+ ++K + +Y F + Q L+ L L+ P EE++ AV+
Sbjct: 186 VEIVEEVKDMVNKYYYELFTTNVDTSEWFQTSLAFPRLDLETLEILRHPLVDEEIRSAVF 245
Query: 408 SCVGSKSPGLDGFDFTFFKKLWDI 431
S K+PG DGF F++K W I
Sbjct: 246 SMTPWKAPGPDGFPAGFYQKSWSI 269
>IMGA|Medtr3g076330.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
17637941-17639415 E EGN_Mt090430 20090702
Length = 123
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 51/109 (46%)
Query: 311 SRIQWGKLGDRNTRLFQVVASKRKTSNYIASLTHNGESLSSPSKIKFAIFDHYKNFFGST 370
SR QW + GD N++ F + R+ N I S+ + ++ AIF H+ F S
Sbjct: 15 SRSQWLREGDANSKFFHFIMFSRRHFNTICSVLVEDVRIEGVEPVRNAIFTHFAQHFKSQ 74
Query: 371 PKGPLNTQGLSLKSLSEADSRSLKTPFTTEEVKIAVWSCVGSKSPGLDG 419
+ L + LS L PF+ +EVK A+W C KSPG DG
Sbjct: 75 NVVRPSISNLRFRVLSVTAGGGLIKPFSVDEVKEAIWDCDSYKSPGPDG 123
>IMGA|Medtr1g089700.1 reverse transcriptase, putative; 16838-20266,
related chr01_pseudomolecule_IMGAG_V3 17930727-17931209
H EGN_Mt090430 20090702
Length = 160
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
Query: 288 EYKTLSANFWRTQKAQDSYWKQVSRIQWGKLGDRNTRLFQVVASKRKTSNYIASLT-HNG 346
+ K + N ++ +W Q ++ QW K GD NT+ F AS+RK NYI S+T NG
Sbjct: 15 QIKEIETNLNDVLLQEEVWWAQRAKTQWLKYGDNNTKFFHFKASQRKKKNYIYSITDKNG 74
Query: 347 ESLSSPSKIKFAIFDHYKNFFGST-PKGPLNTQGLSLKSLSEADSRSLKTPFTTEEVKIA 405
+ I +++ + F ++ P N + + L FT EEV+
Sbjct: 75 REWNDDIHIHDIFTNYFADIFSTSHPTEVHNNLDVISNRVPTDRQAELSADFTIEEVEAT 134
Query: 406 VWSCVGSKSPGLDG 419
+ S + +PGLDG
Sbjct: 135 MKSMKATSAPGLDG 148
>IMGA|Medtr5g009520.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
2111344-2110511 H EGN_Mt090430 20090702
Length = 277
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 100/229 (43%), Gaps = 15/229 (6%)
Query: 205 FRFIDAWRTFPTFKNLVSLWWREAPFEANAFVISKLKFPKSKLKVXNKECFGNIEAEYAN 264
F F +AW P F N V W + N + +K + + + N+ F +++ + N
Sbjct: 17 FMFENAWLIDPKFHNFVCNKWHS--YGEND-ISAKSSMCVADISLWNRNHFLHLKHDIDN 73
Query: 265 MDAKLDAFDRIYEVRAFSQEELIEYKTLSANFWRTQKAQDSYWKQVSRIQWGKLGDRNTR 324
KLD + +V A + + L +D++W+Q ++ W + GD NTR
Sbjct: 74 CRRKLDCV--LSQVHA---GNIKYFNALRKCMSHLLAKEDTFWRQRAKTHWFREGDLNTR 128
Query: 325 LFQVVASKRKTSNYIASLTHNGESLSSPSKIKFAIFDHYKNFFGSTPKGPLNTQGLSLK- 383
F A+ R+ N + SL + + S + ++ +++F P+N L
Sbjct: 129 FFHAAATSRRKINCLTSLVNTPSTRIKDSLVLCSV---PRDYFAEIFHKPINILYPVLDA 185
Query: 384 ---SLSEADSRSLKTPFTTEEVKIAVWSCVGSKSPGLDGFDFTFFKKLW 429
S+SE + +L T FT +E + A++S K G F+ F++ W
Sbjct: 186 INPSISEDANTNLTTLFTIDEFRDAMFSMKLDKYLGPGRFNPDFYQYFW 234
>IMGA|Medtr2g111130.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr02_pseudomolecule_IMGAG_V3
26299553-26300277 H EGN_Mt090430 20090702
Length = 207
Score = 60.5 bits (145), Expect = 5e-09, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 596 PKKGLRQGCLLSPFHFILSAEGLNSLFIKASFLGLFKGFPCAIGDNDSITHLKFVDDTLL 655
P +GLRQ LSP+ FIL AEGL++L KA G G G ++HL F DD L
Sbjct: 95 PGRGLRQADPLSPYLFILVAEGLSTLIHKAVNRGGIHGVQVCCG-APLVSHLLFADDCFL 153
Query: 656 FCESSMKCILNVKRILHCFELLSGVKINF 684
FC +++ + IL +E+ SG +IN
Sbjct: 154 FCRANVVEAQRLLTILKTYEVASGQEINL 182
>IMGA|Medtr4g159480.1 Endonuclease/exonuclease/phosphatase
chr04_pseudomolecule_IMGAG_V3 40245955-40247247 H
EGN_Mt090430 20090702
Length = 395
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Query: 298 RTQKAQDSYWKQVSRIQWGKLGDRNTRLFQVVASKRKTSNYIASL-THNGESLSSPSKIK 356
R + ++++WKQ ++ W K GD NT+ F A R ++ L T +G + ++ +
Sbjct: 245 RASQMEEAFWKQRVKMHWLKEGDINTKFFHTSAIARGKVKKVSKLRTDDGITDTTQEDMC 304
Query: 357 FAIFDHYKNFFGSTPKGPLNTQGLSLKSLSEADSRSLKTPFTTEEVKIAVWSCVGSKSPG 416
+++ F + L K +S D+ L +P T +E++ A++ KSPG
Sbjct: 305 NVAQSYFEQLFSANAGVHEPVLDLMNKCVSIDDNIILTSPITKQELRQALFQMQPDKSPG 364
Query: 417 LDGFDFTFFKKLW 429
+GF+ F+++ W
Sbjct: 365 PNGFNQAFYQRFW 377
>IMGA|AC235488_20.1 RNA-directed DNA polymerase (reverse
transcriptase), related AC235488.1 85313-83267 H
EGN_Mt090430 20090702
Length = 380
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 21/163 (12%)
Query: 588 GSPSCEFQPKKGLRQGCLLSPFHFILSAEGLNSLFIKASFLGLFKGFPCAIGDNDSITHL 647
GS + + ++GL+QG L+ F +L AE N + A LFKGF + I+HL
Sbjct: 19 GSLAVKIDIRRGLKQGDPLALFLLLLMAESFNGVISNAMSHNLFKGFKIK-NEGGGISHL 77
Query: 648 KFVDDTLLFCESSMKCILNVKRILHCFELLSGVKINFHXXXXXXXXXXXXPYQVLLTILI 707
+++DD L E+SM L VK C L G+ + + + ++
Sbjct: 78 QYMDDALSIGEASMPSGLKVKFYKSC---LQGINV----------------FSKFMG-MV 117
Query: 708 APNLNCSLKDWPIKYLALLLGSSPRRKTFWEPLIQCIKSRLAS 750
LNC + P+KYL L +G +P + WEP ++ + +L S
Sbjct: 118 CKFLNCIERVMPLKYLGLSVGVNPLKLVTWEPTLEQLSQKLQS 160
>IMGA|AC235488_13.1 RNA-directed DNA polymerase (reverse
transcriptase), related AC235488.1 57815-55346 H
EGN_Mt090430 20090702
Length = 380
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 21/163 (12%)
Query: 588 GSPSCEFQPKKGLRQGCLLSPFHFILSAEGLNSLFIKASFLGLFKGFPCAIGDNDSITHL 647
GS + + ++GL+QG L+ F +L AE N + A LFKGF + I+HL
Sbjct: 19 GSLAVKIDIRRGLKQGDPLALFLLLLMAESFNGVISNAMSHNLFKGFKIK-NEGGGISHL 77
Query: 648 KFVDDTLLFCESSMKCILNVKRILHCFELLSGVKINFHXXXXXXXXXXXXPYQVLLTILI 707
+++DD L E+SM L VK C L G+ + + + ++
Sbjct: 78 QYMDDALSIGEASMPSGLKVKFYKSC---LQGINV----------------FSKFMG-MV 117
Query: 708 APNLNCSLKDWPIKYLALLLGSSPRRKTFWEPLIQCIKSRLAS 750
LNC + P+KYL L +G +P + WEP ++ + +L S
Sbjct: 118 CKFLNCIERVMPLKYLGLSVGVNPLKLVTWEPTLEQLSQKLQS 160
>IMGA|AC235488_29.1 RNA-directed DNA polymerase (reverse
transcriptase), related AC235488.1 131244-129198 H
EGN_Mt090430 20090702
Length = 380
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 21/163 (12%)
Query: 588 GSPSCEFQPKKGLRQGCLLSPFHFILSAEGLNSLFIKASFLGLFKGFPCAIGDNDSITHL 647
GS + + ++GL+QG L+ F +L AE N + A LFKGF + I+HL
Sbjct: 19 GSLAVKIDIRRGLKQGDPLALFLLLLMAESFNGVISNAMSHNLFKGFKIK-NEGGGISHL 77
Query: 648 KFVDDTLLFCESSMKCILNVKRILHCFELLSGVKINFHXXXXXXXXXXXXPYQVLLTILI 707
+++DD L E+SM L VK C L G+ + + + ++
Sbjct: 78 QYMDDALSIGEASMPSGLKVKFYKSC---LQGINV----------------FSKFMG-MV 117
Query: 708 APNLNCSLKDWPIKYLALLLGSSPRRKTFWEPLIQCIKSRLAS 750
LNC + P+KYL L +G +P + WEP ++ + +L S
Sbjct: 118 CKFLNCIERVMPLKYLGLSVGVNPLKLVTWEPTLEQLSQKLQS 160
>IMGA|Medtr8g021900.1 contains similarity to reverse trancriptase,
related, putative chr08_pseudomolecule_IMGAG_V3
4206337-4207793 E EGN_Mt090430 20090702
Length = 357
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 109/238 (45%), Gaps = 25/238 (10%)
Query: 622 FIKASFLGLFKGFP---------CAIGDND-SITHLKFVDDTLLFCESSMKCILNVKRIL 671
F++A+ L + GFP +I N +I+HL F DD ++FC ++ ++K I
Sbjct: 12 FLEATLLTM--GFPKKLVSSIMGISIARNAPAISHLFFADDNMIFCRANKSEAKHLKEIF 69
Query: 672 HCFELLSGVKINFHXXXXX----XXXXXXXPYQVLLTILIAPNLNCSLKDWPIKYLALLL 727
++ + G KIN + +Q + I I ++ KYL L
Sbjct: 70 DEYKRVLGQKINLNKSEMVFSPNIIQSVKKEFQDFMPIQITDSIT--------KYLGLPT 121
Query: 728 GSSPRRKTFWEPLIQCIKSRLASXEGKLLSRAGILVLIKSVLHSLPTYSLSLFVFRQVXL 787
+ + +++ ++++L + + LS +G VLI++V+ +LPTY +S+F+ +
Sbjct: 122 QVGRSKTHTFNFIMERVRAKLKGWKERNLSFSGRGVLIRAVIQALPTYVMSMFLIPEGIC 181
Query: 788 QXLKNSRNIF-WNASVDKKALATISXDLIKLQRRMGGLGIGFILEKNYALLFKWVCRF 844
++ + F W + D++ + + D + + GG G + N ALL K V R
Sbjct: 182 DKIEQAICRFWWGGNEDRRRIHWKNKDFLFKPKFSGGQGFRTMRSFNEALLAKQVWRL 239
>IMGA|Medtr3g162890.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
42636230-42638565 E EGN_Mt090430 20090702
Length = 167
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 2/149 (1%)
Query: 285 ELIEYKTLSANFWRTQKAQDSY-WKQVSRIQWGKLGDRNTRLFQVVASKRKTSNYIASLT 343
+LI ++ N + AQ+ W Q SR W K ++NT+ F V R+ N +A L
Sbjct: 16 DLINFERHLQNEYNKVLAQEKMLWYQKSRENWIKFENKNTKFFHVQTVIRRRRNKVAGLN 75
Query: 344 HNGESLSSPSKIKFAIFDHYKNFFGST-PKGPLNTQGLSLKSLSEADSRSLKTPFTTEEV 402
+G + ++ ++++ F P P + +S SL + EEV
Sbjct: 76 IDGIWCINEDSLRREALSYFRSLFQEGGPTSPSSLHFSHFPHISIDLYNSLCLNPSLEEV 135
Query: 403 KIAVWSCVGSKSPGLDGFDFTFFKKLWDI 431
K +++S K+PG DGF FFK W+I
Sbjct: 136 KFSLFSMNSYKAPGQDGFQPIFFKTFWNI 164
>IMGA|Medtr3g009340.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
1329629-1330366 H EGN_Mt090430 20090702
Length = 245
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 588 GSPSCEFQPKKGLRQGCLLSPFHFILSAEGLNSLFIKASFLGLFKGFPCAIGDNDSITHL 647
GS S EFQP++GLRQG LSP+ FI+ + + L KA+ L G G + ITHL
Sbjct: 173 GSNSKEFQPQRGLRQGDPLSPYLFIICVDVFSELINKANNNKLIHGVKIVNGAPE-ITHL 231
Query: 648 KFVDDTLLFCESS 660
F D L FC+++
Sbjct: 232 FFADANLTFCKAT 244
>IMGA|Medtr7g068060.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr07_pseudomolecule_IMGAG_V3
13863857-13863375 E EGN_Mt090430 20090702
Length = 116
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 596 PKKGLRQGCLLSPFHFILSAEGLNSLFIKASFLGLFKGFPCAIGDNDSITHLKFVDDTLL 655
P GLR+G LSP+ FIL A+GL SL KA G G G + THL FVDD L
Sbjct: 53 PGSGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTG-APTFTHLLFVDDCFL 111
Query: 656 FCESS 660
FC ++
Sbjct: 112 FCRAT 116
>IMGA|Medtr3g113540.1 RNA-directed DNA polymerase, related
chr03_pseudomolecule_IMGAG_V3 28541066-28540752 H
EGN_Mt090430 20090702
Length = 104
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 605 LLSPFHFILSAEGLNSLFIKASFLGLFKGFPCAIGDNDSITHLKFVDDTLLFCESSMKCI 664
L++PF F+L AEG + L + A LF GF + I+ L++VDDT +M+ +
Sbjct: 6 LIAPFLFLLVAEGFSGLMLTAVNRNLFHGFDIK-REGTCISRLQYVDDTHCIGVPTMENL 64
Query: 665 LNVKRILHCFELLSGVKINFH 685
+K +L FEL S +K+N+H
Sbjct: 65 WILKALLQGFELASDIKVNYH 85
>IMGA|Medtr5g038940.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
16454846-16455376 H EGN_Mt090430 20090702
Length = 125
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 615 AEGLNSLFIKASFLGLFKGFPCAIGDND-SITHLKFVDDTLLFCESSMKCILNVKRILHC 673
AE L+ K +G+F F +G + S+THL++VDD L +++M+ + +K IL C
Sbjct: 37 AEALSMFVRKTEMVGMFTDF--KVGRSGLSVTHLQYVDDALFIGKATMEKLWAIKTILRC 94
Query: 674 FELLSGVKINF 684
FEL G+++NF
Sbjct: 95 FELALGLRVNF 105
>IMGA|Medtr3g138260.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
35326334-35325873 H EGN_Mt090430 20090702
Length = 153
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 70/135 (51%), Gaps = 5/135 (3%)
Query: 237 ISKLKFPKSKLKVXNKECFGNIEAEYANMDAKLDAFDRIYEVRAFSQEELIEYKTLSANF 296
I+KL + +L +++ FG++ ++ + L+A + + + +++ K L +
Sbjct: 5 ITKLHYTLDQLHRWSRDKFGDVPSKIRMLQNTLEALKKGIPTK----DCILKIKQLEVDL 60
Query: 297 WRTQKAQDSYWKQVSRIQWGKLGDRNTRLFQVVASKRKTSNYIASL-THNGESLSSPSKI 355
K ++ +W Q +++ W K GD NT+ F AS+RK NYI+++ +G +KI
Sbjct: 61 DDLLKQEELWWAQRAKVHWLKHGDLNTKYFHHKASQRKRKNYISNIQDQSGNFWQDSNKI 120
Query: 356 KFAIFDHYKNFFGST 370
+H++N F S+
Sbjct: 121 HSIFSNHFQNIFSSS 135
>IMGA|Medtr2g100360.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr02_pseudomolecule_IMGAG_V3
23360766-23362551 H EGN_Mt090430 20090702
Length = 379
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 742 QCIKSRLASXEGKLLSRAGILVLIKSVLHSLPTYSLSLFVFRQVXLQXLKN-SRNIFWNA 800
+ I RLAS + LL++ G + L+KSVL+S+P Y + + Q + + + N W
Sbjct: 14 ENISQRLASWQHHLLNKVGRMTLVKSVLNSIPYYYMQVAWLPQSTCESIDRLAINFLWKG 73
Query: 801 SVDKKALATISXDLIKLQRRMGGLGIGFILEKNYALLFKWVCRFASNEESLWKSFITKK 859
S + + + + + I +++GGL I E N +LL + V R N +SLW +T K
Sbjct: 74 SSNFR-IYLVGWEKITKPKKLGGLEIRKAREANTSLLGRLVWRLHQNCDSLWVKVLTHK 131
>IMGA|Medtr4g140270.1 RNA-directed DNA polymerase ; Ribonuclease H,
putative chr04_pseudomolecule_IMGAG_V3 34349081-34347530
H EGN_Mt090430 20090702
Length = 346
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 744 IKSRLASXEGKLLSRAGILVLIKSVLHSLPTYSLSLFVFRQVXLQXLKN-SRNIFWNASV 802
I RLAS + LL++ G + L+KSVL+S+P Y + + Q + + + N W S
Sbjct: 16 ISQRLASWQHHLLNKVGRMTLVKSVLNSIPYYYMQVAWLPQSTCESIDRLAINFLWKGSS 75
Query: 803 DKKALATISXDLIKLQRRMGGLGIGFILEKNYALLFKWVCRFASNEESLWKSFITKK 859
+ + + + + I +++GGL I E N +LL + V R N +SLW +T K
Sbjct: 76 NFR-IYLVGWEKITKPKKLGGLEIRKAREANTSLLGRLVWRLHQNCDSLWVKVLTHK 131
>IMGA|Medtr2g100590.1 Ribonuclease H chr02_pseudomolecule_IMGAG_V3
23474829-23476616 H EGN_Mt090430 20090702
Length = 477
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 744 IKSRLASXEGKLLSRAGILVLIKSVLHSLPTYSLSLFVFRQVXLQXLKN-SRNIFWNASV 802
I RLAS + LL++ G + L+KSVL+S+P Y + + Q + + + N W S
Sbjct: 16 ISQRLASWQHHLLNKVGRMTLVKSVLNSIPYYYMQVAWLPQSTCESIDRLAINFLWKGSS 75
Query: 803 DKKALATISXDLIKLQRRMGGLGIGFILEKNYALLFKWVCRFASNEESLWKSFITKK 859
+ + + + + I +++GGL I E N +LL + V R N +SLW +T K
Sbjct: 76 NFR-IYLVGWEKITKPKKLGGLEIRKAREANTSLLGRLVWRLHQNCDSLWVKVLTHK 131
>IMGA|Medtr2g100610.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr02_pseudomolecule_IMGAG_V3
23480965-23481815 H EGN_Mt090430 20090702
Length = 251
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 742 QCIKSRLASXEGKLLSRAGILVLIKSVLHSLPTYSLSLFVFRQVXLQXLKN-SRNIFWNA 800
+ I RLAS + LL++ G + L+KSVL+S+P Y + + Q + + + N W
Sbjct: 14 ENISQRLASWQHHLLNKVGRMTLVKSVLNSIPYYYMQVAWLPQSTCESIDRLAINFLWKG 73
Query: 801 SVDKKALATISXDLIKLQRRMGGLGIGFILEKNYALLFKWVCRFASNEESLWKSFITKK 859
S + + + + + I +++GGL I E N +LL + V R N +SLW +T K
Sbjct: 74 SSNFR-IYLVGWEKITKPKKLGGLEIRKAREANTSLLGRLVWRLHQNCDSLWVKVLTHK 131
>IMGA|Medtr2g100330.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr02_pseudomolecule_IMGAG_V3
23354620-23355450 H EGN_Mt090430 20090702
Length = 276
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 742 QCIKSRLASXEGKLLSRAGILVLIKSVLHSLPTYSLSLFVFRQVXLQXLKN-SRNIFWNA 800
+ I RLAS + LL++ G + L+KSVL+S+P Y + + Q + + + N W
Sbjct: 14 ENISQRLASWQHHLLNKVGRMTLVKSVLNSIPYYYMQVAWLPQSTCESIDRLAINFLWKG 73
Query: 801 SVDKKALATISXDLIKLQRRMGGLGIGFILEKNYALLFKWVCRFASNEESLWKSFITKK 859
S + + + + + I +++GGL I E N +LL + V R N +SLW +T K
Sbjct: 74 SSNFR-IYLVGWEKITKPKKLGGLEIRKAREANTSLLGRLVWRLHQNCDSLWVKVLTHK 131