Jatropha Genome Database

JcCB0128761.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0128761.20 + phase: 0 /TE/pseudo/partial
         (89 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC229695_21.1 RNA-directed DNA polymerase (Reverse transcri...    52   7e-08
IMGA|AC234026_1.1 RNA-directed DNA polymerase (Reverse transcrip...    50   3e-07
IMGA|Medtr5g047510.1 Putative gag-pol polyprotein, identical, ch...    50   3e-07
IMGA|Medtr4g073740.1 polyprotein, putative chr04_pseudomolecule_...    49   9e-07
IMGA|Medtr3g162430.1 RNA-directed DNA polymerase (Reverse transc...    47   2e-06
IMGA|Medtr4g041210.1 RNA-directed DNA polymerase (Reverse transc...    46   4e-06
IMGA|Medtr3g026370.1 RNA-directed DNA polymerase (Reverse transc...    46   5e-06

>IMGA|AC229695_21.1 RNA-directed DNA polymerase (Reverse
           transcriptase); Polynucleotidyl transferase,
           Ribonuclease H fold AC229695.5 96798-94993 H
           EGN_Mt090430 20090702
          Length = 555

 Score = 52.0 bits (123), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 44/80 (55%)

Query: 2   IRRSASKLSVGP*EKSTDRFRSPESRRLNEARQKWSTYEQELYAVF*AFKTWEHYLLGRE 61
           I   AS   +G       R  +  S+ L+E  Q+ S YE+EL A+  A + W HYL+G  
Sbjct: 161 IETDASNTGLGAILMQQGRPVAFLSQPLSERAQRKSIYERELMAIVFAVQKWRHYLMGNH 220

Query: 62  FIIYTDHQALTHLQTQKKVS 81
           FII+TD ++L  LQ Q+ + 
Sbjct: 221 FIIHTDQKSLKFLQDQRVLG 240


>IMGA|AC234026_1.1 RNA-directed DNA polymerase (Reverse
           transcriptase) AC234026.1 2154-4412 H EGN_Mt090430
           20090702
          Length = 705

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 33/56 (58%)

Query: 26  SRRLNEARQKWSTYEQELYAVF*AFKTWEHYLLGREFIIYTDHQALTHLQTQKKVS 81
           S+ L+      S YE+EL A+    + W HYLLG+ F ++TDH++L H   Q+  S
Sbjct: 473 SKALSAGNLSKSVYEKELMALVLCIQHWRHYLLGKAFTVHTDHKSLKHFLQQRVTS 528


>IMGA|Medtr5g047510.1 Putative gag-pol polyprotein, identical,
           chr05_pseudomolecule_IMGAG_V3 20065664-20063904 H
           EGN_Mt090430 20090702
          Length = 460

 Score = 49.7 bits (117), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 27/34 (79%)

Query: 49  AFKTWEHYLLGREFIIYTDHQALTHLQTQKKVSK 82
           A + WEHYL+ REFI++TDHQAL  L +QK ++K
Sbjct: 262 ALRQWEHYLIHREFILFTDHQALKFLHSQKVINK 295


>IMGA|Medtr4g073740.1 polyprotein, putative
          chr04_pseudomolecule_IMGAG_V3 14702170-14702511 H
          EGN_Mt090430 20090702
          Length = 113

 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%)

Query: 26 SRRLNEARQKWSTYEQELYAVF*AFKTWEHYLLGREFIIYTDHQALTHLQTQKKVSK 82
          S+ L++  Q    YE+EL A+  A + W HYLLGR FII TD ++L  L  Q+ +++
Sbjct: 42 SQNLSDRAQSKLVYERELMAIVTAVQKWRHYLLGRHFIILTDQKSLKLLVDQRLLNE 98


>IMGA|Medtr3g162430.1 RNA-directed DNA polymerase (Reverse
           transcriptase); Retrotransposon gag protein;
           Polynucleotidyl transferase, Ribonuclease H fold
           chr03_pseudomolecule_IMGAG_V3 42425246-42419198 E
           EGN_Mt090430 20090702
          Length = 1584

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%)

Query: 26  SRRLNEARQKWSTYEQELYAVF*AFKTWEHYLLGREFIIYTDHQALTHLQTQ 77
           S+++    Q  S Y +E+YA+  A K W  YL+GR F IYTD ++L +L  Q
Sbjct: 880 SKKMCNRMQSSSVYVREMYAITEAIKKWHQYLIGRHFHIYTDQKSLKNLLVQ 931


>IMGA|Medtr4g041210.1 RNA-directed DNA polymerase (Reverse
           transcriptase); Peptidase aspartic, active site;
           Retrotransposon gag protein; Polynucleotidyl
           transferase, Ribonuclease H fold
           chr04_pseudomolecule_IMGAG_V3 9673679-9667953 H
           EGN_Mt090430 20090702
          Length = 1435

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 33/52 (63%)

Query: 26  SRRLNEARQKWSTYEQELYAVF*AFKTWEHYLLGREFIIYTDHQALTHLQTQ 77
           S++L+   QK S Y +ELYA+  A   + HYL+G +FII TD ++L  L  Q
Sbjct: 905 SKKLSPRMQKQSAYVRELYAISEAISKFRHYLIGHQFIIRTDQKSLKSLTDQ 956


>IMGA|Medtr3g026370.1 RNA-directed DNA polymerase (Reverse
           transcriptase) chr03_pseudomolecule_IMGAG_V3
           7081109-7063368 E EGN_Mt090430 20090702
          Length = 377

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 34/52 (65%)

Query: 26  SRRLNEARQKWSTYEQELYAVF*AFKTWEHYLLGREFIIYTDHQALTHLQTQ 77
           S++L +   + STY +EL+A+  A K W  YLLG  F I+TDH++L  L +Q
Sbjct: 283 SKQLCQRLLRSSTYVRELHAITTAVKKWRQYLLGHPFTIHTDHKSLKELISQ 334