Jatropha Genome Database

JcCB0128551.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0128551.10 + phase: 0 /pseudo/partial
         (257 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g017070.1 hypothetical protein chr01_pseudomolecule_I...   237   4e-63
IMGA|Medtr4g022190.1 binding, related chr04_pseudomolecule_IMGAG...   214   4e-56
IMGA|Medtr3g138190.1 hypothetical protein chr03_pseudomolecule_I...   212   2e-55
IMGA|Medtr1g017090.1 binding, related chr01_pseudomolecule_IMGAG...   194   5e-50
IMGA|Medtr2g032740.1 HEAT, identical chr02_pseudomolecule_IMGAG_...   152   2e-37
IMGA|Medtr4g031850.1 T24D18.4, related chr04_pseudomolecule_IMGA...    96   3e-20
IMGA|Medtr4g031770.1 T24D18.4, putative chr04_pseudomolecule_IMG...    84   8e-17
IMGA|Medtr4g031760.1 hypothetical protein chr04_pseudomolecule_I...    62   3e-10

>IMGA|Medtr1g017070.1 hypothetical protein
           chr01_pseudomolecule_IMGAG_V3 3515904-3506270 E
           EGN_Mt090430 20090702
          Length = 930

 Score =  237 bits (604), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 114/225 (50%), Positives = 166/225 (73%)

Query: 1   RLEVSLSKVTQSPSASMIAALSPSRNALVSDKLLRHSDTDVKVSVAVCISEIMRITAPNA 60
           ++E  LS+V QSP  SM+ ALSPS  AL++DKL++HSD DVKV++A C SEI RITAP+A
Sbjct: 35  QIESCLSRVEQSPPESMLNALSPSLKALIADKLIKHSDADVKVALASCFSEITRITAPDA 94

Query: 61  PYGDEQMKEVFHLILAVFQKLSHMSSCCYSKVVSVLVTIATIRAIVVMVDLECHSLIVDM 120
           PY D QMKEVF LI++ F+ L   SS  YSK   +L T+A +R+ VVM+DLEC +LI++M
Sbjct: 95  PYDDGQMKEVFRLIVSSFENLHDKSSRWYSKRTLILETVAKVRSCVVMLDLECDALILEM 154

Query: 121 FHLFLRVTRSNSSDVVLSAMVSTMTIAILESDEISLEILFPLLASVRKENQNVFSTSWKL 180
           F  FL+  R +  D V S+M + M + + ES+EIS ++L P+L SV+K+N+ V   + KL
Sbjct: 155 FQHFLKTIREHHPDNVFSSMETIMILCLEESEEISDDLLSPILDSVKKDNEEVLPIARKL 214

Query: 181 GKEVIGNCAAKIQPYVLKAVNSLGVSVDSYDEVIASICRNATDNV 225
           G+ V+ +CA +++P +L+AVN+LG+S+D Y +V+ASIC+  +DN+
Sbjct: 215 GERVLESCATRLKPCLLQAVNTLGISLDDYGDVLASICKETSDNL 259


>IMGA|Medtr4g022190.1 binding, related chr04_pseudomolecule_IMGAG_V3
           4456806-4451890 E EGN_Mt090430 20090702
          Length = 835

 Score =  214 bits (545), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 101/213 (47%), Positives = 145/213 (68%)

Query: 11  QSPSASMIAALSPSRNALVSDKLLRHSDTDVKVSVAVCISEIMRITAPNAPYGDEQMKEV 70
           Q+P   +  +L      L+SD+LL+H+D DVK+SV  C++EI RITAPN PY DE MKE 
Sbjct: 48  QNPPEPIQESLVLPMKTLISDELLKHTDEDVKISVTACLTEIARITAPNDPYDDENMKEF 107

Query: 71  FHLILAVFQKLSHMSSCCYSKVVSVLVTIATIRAIVVMVDLECHSLIVDMFHLFLRVTRS 130
           F L +A F+ LSH+S   Y K +++L  I+ I+  ++M+DLEC  L+++MF  FLR+ RS
Sbjct: 108 FKLTVAAFENLSHVSGRRYEKALTILEKISKIKIFLIMLDLECDDLVIEMFQQFLRIIRS 167

Query: 131 NSSDVVLSAMVSTMTIAILESDEISLEILFPLLASVRKENQNVFSTSWKLGKEVIGNCAA 190
           N    V+ +M   MT  + ES++IS ++L PLL SVRKENQ +   SW LG++VI NCA 
Sbjct: 168 NHPSSVIESMEIVMTGILDESEDISSDLLRPLLDSVRKENQTISPISWTLGEKVITNCAV 227

Query: 191 KIQPYVLKAVNSLGVSVDSYDEVIASICRNATD 223
           K++PY++KAV S G +++ Y E I SIC N ++
Sbjct: 228 KLKPYLMKAVESSGRALNEYAETITSICHNKSE 260


>IMGA|Medtr3g138190.1 hypothetical protein
           chr03_pseudomolecule_IMGAG_V3 35270248-35277086 E
           EGN_Mt090430 20090702
          Length = 825

 Score =  212 bits (539), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 103/226 (45%), Positives = 153/226 (67%)

Query: 1   RLEVSLSKVTQSPSASMIAALSPSRNALVSDKLLRHSDTDVKVSVAVCISEIMRITAPNA 60
           RLE  L+KV Q+P  SM  AL+P    LV +KLLRH D DVK ++A CISEI RI+AP+ 
Sbjct: 35  RLESYLAKVEQAPRTSMRTALAPCMKELVGNKLLRHPDPDVKAALAACISEITRISAPDT 94

Query: 61  PYGDEQMKEVFHLILAVFQKLSHMSSCCYSKVVSVLVTIATIRAIVVMVDLECHSLIVDM 120
           PY D+QMKE+F LI++ F+ L    S  Y     VL T+A +R+ VVM+DL+C +LI++M
Sbjct: 95  PYDDDQMKEIFQLIVSSFENLHDKLSRSYENRRIVLETVAKVRSCVVMLDLDCDALILEM 154

Query: 121 FHLFLRVTRSNSSDVVLSAMVSTMTIAILESDEISLEILFPLLASVRKENQNVFSTSWKL 180
           F  FL+  R +    V S+M + MT+ + ES++IS ++L PLL S++K N+ VF  + KL
Sbjct: 155 FQHFLKTIRDHHPKDVFSSMETIMTLVLEESEDISFDLLSPLLESIKKNNEEVFPIARKL 214

Query: 181 GKEVIGNCAAKIQPYVLKAVNSLGVSVDSYDEVIASICRNATDNVK 226
           G+ V+ +C +K++P +++AV +LG+S+D Y EV+ SI +     +K
Sbjct: 215 GERVLESCGSKLKPCLVQAVRTLGISLDDYSEVLGSIFQEEAKAIK 260


>IMGA|Medtr1g017090.1 binding, related chr01_pseudomolecule_IMGAG_V3
           3529989-3527497 E EGN_Mt090430 20090702
          Length = 246

 Score =  194 bits (492), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 98/188 (52%), Positives = 133/188 (70%)

Query: 5   SLSKVTQSPSASMIAALSPSRNALVSDKLLRHSDTDVKVSVAVCISEIMRITAPNAPYGD 64
           SLSKV QSPS S+  ALSPS  AL+SDKL++HSD  VKV++A C+SE+ RITAP+ PY D
Sbjct: 51  SLSKVEQSPSKSIQKALSPSLKALISDKLIKHSDVGVKVALASCLSELTRITAPDGPYND 110

Query: 65  EQMKEVFHLILAVFQKLSHMSSCCYSKVVSVLVTIATIRAIVVMVDLECHSLIVDMFHLF 124
            QMKEV  LI++ F+ L  MSS  Y   +S+L T+A +R  VVM+DLEC +LI++MF LF
Sbjct: 111 HQMKEVLRLIVSSFENLHDMSSRWYETRISILETVAKVRLCVVMLDLECDALILEMFRLF 170

Query: 125 LRVTRSNSSDVVLSAMVSTMTIAILESDEISLEILFPLLASVRKENQNVFSTSWKLGKEV 184
           L+  R    ++V S+M + M   I ESD+ISL +L+P+L  V+K+N+ V   + KLGK V
Sbjct: 171 LKTIREYHPEIVFSSMEAIMARVIEESDDISLGLLYPILDCVKKDNKVVSPIARKLGKSV 230

Query: 185 IGNCAAKI 192
           +  CA K+
Sbjct: 231 LQKCATKL 238


>IMGA|Medtr2g032740.1 HEAT, identical chr02_pseudomolecule_IMGAG_V3
           8737391-8755379 E EGN_Mt090430 20090702
          Length = 1683

 Score =  152 bits (383), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/220 (38%), Positives = 135/220 (61%), Gaps = 7/220 (3%)

Query: 6   LSKVTQSPSASMIAALSPSRNALVSDKLLRHSDTDVKVSVAVCISEIMRITAPNAPYGDE 65
           L+ + QSPSAS + ++ P  NA+V  +LL+H D DVK+ VA C+ EI RITAP APY D+
Sbjct: 37  LTDMDQSPSASALESMKPFLNAIVKSELLKHQDRDVKLLVATCVCEITRITAPEAPYSDD 96

Query: 66  QMKEVFHLILAVFQKLSHMSSCCYSKVVSVLVTIATIRAIVVMVDLECHSLIVDMFHLFL 125
            +K++F LI++ F  LS +SS  +   V++L T+A  R+ VVM+DLEC  L+ ++F+ F 
Sbjct: 97  VLKDIFQLIVSTFSGLSDISSPSFGMEVAMLDTLAKYRSCVVMLDLECDDLVNEIFNTFF 156

Query: 126 RVTRSNSSDVVLSAMVSTMTIAILESDEISLEILFPLLASVRKENQNVFSTSWKLGKEVI 185
            V R +  + VLS+M S M + + ES+++  ++L  LL+ + +E ++V + + KL   VI
Sbjct: 157 AVVRDDHPESVLSSMQSIMAVLLEESEDVREDLLSILLSMLGREKRDVTAAARKLSMNVI 216

Query: 186 GNCAAKIQP----YVLKAVNSLGVSVDSY---DEVIASIC 218
             C   ++P    + L  V+     V+S     EV+  IC
Sbjct: 217 QQCIGTLEPSIKEFFLSLVSGKSKPVNSQLQNHEVLYDIC 256


>IMGA|Medtr4g031850.1 T24D18.4, related
           chr04_pseudomolecule_IMGAG_V3 7487496-7489265 E
           EGN_Mt090430 20090702
          Length = 150

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 80/127 (62%), Gaps = 11/127 (8%)

Query: 94  SVLVTIATIRAIVVMVDLECHSLIVDMFHLFLRVTRSNSSDVVLSAMVSTMTIAILESDE 153
            +L  I+ I+  ++M+DL+C  L+++MF  FLRV R N    V+ +M   MT  + ES++
Sbjct: 17  QLLEKISKIKIYLIMLDLDCDDLVIEMFQNFLRVIRPNHPSNVIESMEIVMTGILDESED 76

Query: 154 ISLEILFPLLASVRKENQNVFSTSWKLGKEVIGNCAAKIQPYVLKAVNSLGVSVDSYDEV 213
           +S  ++ PLL SVRKENQ           +VI NCA K++ ++++AV S G ++D Y ++
Sbjct: 77  VSSNLVRPLLDSVRKENQ-----------KVITNCAVKLKTHLMQAVESSGRALDEYAQI 125

Query: 214 IASICRN 220
           I SIC+N
Sbjct: 126 ITSICKN 132


>IMGA|Medtr4g031770.1 T24D18.4, putative
          chr04_pseudomolecule_IMGAG_V3 7380025-7379140 H
          EGN_Mt090430 20090702
          Length = 85

 Score = 83.6 bits (205), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 38/67 (56%), Positives = 49/67 (73%)

Query: 28 LVSDKLLRHSDTDVKVSVAVCISEIMRITAPNAPYGDEQMKEVFHLILAVFQKLSHMSSC 87
          L+SD+LLRH+D DVK+SV  C++EI RITAPNAPY DE MKE   L+   F+KLS +S  
Sbjct: 4  LISDELLRHTDDDVKISVTACLTEIARITAPNAPYNDEHMKEYLKLMADAFEKLSGVSGR 63

Query: 88 CYSKVVS 94
           Y K ++
Sbjct: 64 GYEKAIT 70


>IMGA|Medtr4g031760.1 hypothetical protein
           chr04_pseudomolecule_IMGAG_V3 7378069-7377534 H
           EGN_Mt090430 20090702
          Length = 88

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 11/77 (14%)

Query: 144 MTIAILESDEISLEILFPLLASVRKENQNVFSTSWKLGKEVIGNCAAKIQPYVLKAVNSL 203
           MT  + ES+++S  ++ PLL SVRKENQ           +VI NCA K++ ++++AV S 
Sbjct: 5   MTGILDESEDVSSNLVRPLLDSVRKENQ-----------KVITNCAVKLKTHLMQAVESS 53

Query: 204 GVSVDSYDEVIASICRN 220
           G ++D Y ++I SIC+N
Sbjct: 54  GRALDEYAQIITSICKN 70