Jatropha Genome Database

JcCB0127031.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0127031.10 + phase: 0 
         (197 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g015360.1 Helix-loop-helix DNA-binding chr07_pseudomo...    96   1e-20

>IMGA|Medtr7g015360.1 Helix-loop-helix DNA-binding
           chr07_pseudomolecule_IMGAG_V3 3853072-3859438 E
           EGN_Mt090430 20090702
          Length = 366

 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/241 (37%), Positives = 117/241 (48%), Gaps = 52/241 (21%)

Query: 6   KNHHPPVEALLDHPQGLKNGSAHENTAIL----TNVHNSIDSDLGAT------------A 49
           +NHH P E   D  + ++NGS      +      NV N I SD   T             
Sbjct: 125 RNHHGPSENTTDPSRAIQNGSVDGKNIVSPSFPKNVQNPILSDPSTTIPKGCTPGSSTEV 184

Query: 50  VPFNVQVHSNMF--VVGKSGVTTQPVQESVSDAENMEFQLQPQQWHGRPCATECDAPNNT 107
           VP  +Q+  +MF  VV    VT Q ++  VS+ + M   LQPQ W G+P        +NT
Sbjct: 185 VPLTMQMRLDMFDPVVSGGMVTQQMLELPVSNPD-MASNLQPQVWLGKPNKDNHIVSDNT 243

Query: 108 VNGQEEPMGETGSDSISS--TYSQG-------------------ILDTLTQALQSSGVDL 146
           +  QEE   ++GS+S S    YSQ                    IL TLTQALQSSGVDL
Sbjct: 244 LKEQEEMKIDSGSESDSISSAYSQRLSIADSRSSNVVHCDMFTRILGTLTQALQSSGVDL 303

Query: 147 SQTNISVQIDVGKQ---GSNIVASNSKDQENPFLNNQAL---------EDSNRARKRSRR 194
           SQTN+SV IDVG++   G      +SK  EN F++NQA+         EDS ++ KR RR
Sbjct: 304 SQTNVSVDIDVGRRTNTGFTPCQYSSKSNENQFVSNQAIACSGMDYFSEDSEQSSKRFRR 363

Query: 195 E 195
           E
Sbjct: 364 E 364