Jatropha Genome Database

JcCB0125691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0125691.10 + phase: 0 /pseudo
         (202 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g113960.1 Eukaryotic pantothenate kinase chr03_pseudo...   206   5e-54

>IMGA|Medtr3g113960.1 Eukaryotic pantothenate kinase
           chr03_pseudomolecule_IMGAG_V3 28749151-28738871 E
           EGN_Mt090430 20090702
          Length = 899

 Score =  206 bits (524), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 103/170 (60%), Positives = 130/170 (76%), Gaps = 2/170 (1%)

Query: 11  VSGSLIKVVYFSRNRDSSVDHKGESSSNDNPGVFNGNRKH-TVLKGKLHFAKFETSKIND 69
           + GSLIK+VYFSR+   S D K + +  +  G+ NGNR+   +L G+LHF KFET KIN+
Sbjct: 79  IGGSLIKLVYFSRHEGQSDDDKRKKTLKERLGLSNGNRRSFPILGGRLHFVKFETGKINE 138

Query: 70  CLEFISSKKHHLGGFQHHENPAKDK-KFIKATGGGAYKFAELFKEKLGIGLDKEDEMDCL 128
           CL+FI SK+ H G    + +   D+   IKATGGGAYKF +LFKEKLG+ LDKEDEM+CL
Sbjct: 139 CLDFIHSKQLHRGLESRYSDTEADRNAIIKATGGGAYKFTDLFKEKLGVSLDKEDEMNCL 198

Query: 129 VAGANFLLKAVPREVYTYVDGHKEFLQIDHNDLYPYLLVNIGSGVSMIKV 178
           VAGANFLLKA+  E +T+++G KEF+QID NDL+PYLLVN+GSGVSMIKV
Sbjct: 199 VAGANFLLKAIRHEAFTHMEGQKEFVQIDQNDLFPYLLVNVGSGVSMIKV 248