Jatropha Genome Database

JcCB0125511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0125511.10 - phase: 0 /pseudo
         (231 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g006230.1 Spermine synthase chr05_pseudomolecule_IMGA...   377   e-105
IMGA|Medtr1g019470.1 Spermine synthase chr01_pseudomolecule_IMGA...   230   4e-61
IMGA|Medtr3g139360.1 Spermine synthase chr03_pseudomolecule_IMGA...   182   8e-47
IMGA|Medtr5g035800.1 Spermine synthase chr05_pseudomolecule_IMGA...   119   1e-27
IMGA|Medtr3g124370.1 Spermine synthase chr03_pseudomolecule_IMGA...    86   1e-17
IMGA|Medtr3g139350.1 Spermine synthase chr03_pseudomolecule_IMGA...    68   4e-12

>IMGA|Medtr5g006230.1 Spermine synthase
           chr05_pseudomolecule_IMGAG_V3 612746-610087 E
           EGN_Mt090430 20090702
          Length = 328

 Score =  377 bits (967), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 172/215 (80%), Positives = 195/215 (90%)

Query: 1   MGDIACSNGITNGKCHSSPNGYRKSCWYEEEIEENLRWCFALNSILHTGASQYQDIALLD 60
           MG++A +NG  N K HS PNGYRKSCWYEEEIEENLRWCFALNSILHTGASQYQDIALLD
Sbjct: 1   MGEVAYTNGNGNDKSHSPPNGYRKSCWYEEEIEENLRWCFALNSILHTGASQYQDIALLD 60

Query: 61  TKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHSNPKSIFIMGGGEGSTAREILRHR 120
           TKPFGKALV+DGKLQSAE DEFIYHE LVHPALLHH  PK++FIMGGGEGSTARE+LRH+
Sbjct: 61  TKPFGKALVLDGKLQSAETDEFIYHECLVHPALLHHPMPKNVFIMGGGEGSTARELLRHK 120

Query: 121 TVEKVVMCDIDEEVVDFCKAYLVVNREAFCDQRLEIIINDARTELQSRKECYDLIIGDLA 180
           T++KVVMCDIDEEVV+FCK+YLVVN+EAF D RLE++INDA+ EL+ ++E YD+I+GDLA
Sbjct: 121 TIDKVVMCDIDEEVVEFCKSYLVVNKEAFHDSRLEVVINDAKAELEGKEEKYDVIVGDLA 180

Query: 181 DPIEGGPCYKLYTKSFYEFTVKPKLNEAGIFVTQV 215
           DPIEGGPCYKLYTK FYE T+KPKL + GIFVTQ 
Sbjct: 181 DPIEGGPCYKLYTKDFYELTLKPKLKKGGIFVTQA 215


>IMGA|Medtr1g019470.1 Spermine synthase
           chr01_pseudomolecule_IMGAG_V3 3945776-3942130 E
           EGN_Mt090430 20090702
          Length = 262

 Score =  230 bits (587), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 102/146 (69%), Positives = 129/146 (88%)

Query: 69  VIDGKLQSAEVDEFIYHESLVHPALLHHSNPKSIFIMGGGEGSTAREILRHRTVEKVVMC 128
           ++DGK+QS+E DEFIYHE L+HP+LL HSNPK++FIMGGGEGS ARE L+H+++EKVVMC
Sbjct: 1   MLDGKMQSSEADEFIYHECLIHPSLLCHSNPKTVFIMGGGEGSAAREALKHKSMEKVVMC 60

Query: 129 DIDEEVVDFCKAYLVVNREAFCDQRLEIIINDARTELQSRKECYDLIIGDLADPIEGGPC 188
           DID+EVVDFC+ YLV N+EAF D++L+++IN A+ EL+ RKE +D+I+GDLADP+E GPC
Sbjct: 61  DIDKEVVDFCRKYLVANKEAFADKKLDLVINCAKAELEKRKEKFDIIVGDLADPLEDGPC 120

Query: 189 YKLYTKSFYEFTVKPKLNEAGIFVTQ 214
           Y+LYTKSFYE  VKPKL E GIFVTQ
Sbjct: 121 YQLYTKSFYEKVVKPKLTENGIFVTQ 146


>IMGA|Medtr3g139360.1 Spermine synthase
           chr03_pseudomolecule_IMGAG_V3 35851185-35852057 E
           EGN_Mt090430 20090702
          Length = 128

 Score =  182 bits (463), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 85/142 (59%), Positives = 106/142 (74%), Gaps = 14/142 (9%)

Query: 74  LQSAEVDEFIYHESLVHPALLHHSNPKSIFIMGGGEGSTAREILRHRTVEKVVMCDIDEE 133
           + SAE+DEFIYHE L+HP LL H NPK +FIMGGGEGS  RE L+H              
Sbjct: 1   MPSAEMDEFIYHECLIHPPLLCHPNPKRVFIMGGGEGSATRESLKHS------------- 47

Query: 134 VVDFCKAYLVVNREAFCDQRLEIIINDARTELQSRKECYDLIIGDLADPIEGGPCYKLYT 193
            ++FCK YL+ NREAF  ++L+++IND + EL+ RKE +D+I+GDLADP+EGGPCY+LYT
Sbjct: 48  -INFCKKYLITNREAFAHKKLDLVINDDKAELEKRKEKFDIIVGDLADPVEGGPCYQLYT 106

Query: 194 KSFYEFTVKPKLNEAGIFVTQV 215
           KSFYE  +KPKLNE  IFVTQV
Sbjct: 107 KSFYENILKPKLNENDIFVTQV 128


>IMGA|Medtr5g035800.1 Spermine synthase
           chr05_pseudomolecule_IMGAG_V3 14833320-14838452 E
           EGN_Mt090430 20090702
          Length = 343

 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/174 (37%), Positives = 97/174 (55%), Gaps = 4/174 (2%)

Query: 42  LNSILHTGASQYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHSNPKS 101
           +  IL  G S YQ++ +  +  +GK LV+DG +Q  E DE  Y E + H  L    NPK 
Sbjct: 72  VEKILFQGKSDYQNVMVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKK 131

Query: 102 IFIMGGGEGSTAREILRHRTVEKVVMCDIDEEVVDFCKAYLVVNREAFCDQRLEIIINDA 161
           + ++GGG+G   RE+ RH +VEK+ +C+ID+ VVD  K +       F D R+ + I D 
Sbjct: 132 VLVIGGGDGGVLREVSRHASVEKIDICEIDKMVVDVSKQFFPDIAVGFEDPRVTLHIGDG 191

Query: 162 RTELQSRKE-CYDLIIGDLADPIEGGPCYKLYTKSFYEFTVKPKLNEAGIFVTQ 214
              L++  E  YD +I D +DPI  GP  +L+ K F+E +V   L   G+  TQ
Sbjct: 192 VAFLKAAPEGTYDAVIVDSSDPI--GPAQELFEKPFFE-SVARALRPGGVVCTQ 242


>IMGA|Medtr3g124370.1 Spermine synthase
           chr03_pseudomolecule_IMGAG_V3 31515102-31520579 E
           EGN_Mt090430 20090702
          Length = 358

 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 91/162 (56%), Gaps = 4/162 (2%)

Query: 51  SQYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHSNPKSIFIMGGGEG 110
           S YQ++ + ++  +GK LV+DG +Q  E DE  Y E + H  L    +PK++ ++GGG+G
Sbjct: 95  SLYQEVLVFESLTYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKNVLVVGGGDG 154

Query: 111 STAREILRHRTVEKVVMCDIDEEVVDFCKAYLVVNREAFCDQRLEIIINDARTELQSRKE 170
              RE+ RH +VE + +C+ID+ V+D  + +       F D R+ + + DA   L+   E
Sbjct: 155 GVLREVSRHSSVEHIDICEIDKMVIDVSRKFFPELAVGFDDPRVHLHVGDAIEFLKRAPE 214

Query: 171 C-YDLIIGDLADPIEGGPCYKLYTKSFYEFTVKPKLNEAGIF 211
             YD +I D +DP+  GP  +L  K F+E T+   L   G+ 
Sbjct: 215 GRYDAVIVDSSDPV--GPAQELVEKPFFE-TISKALRPGGVL 253


>IMGA|Medtr3g139350.1 Spermine synthase
          chr03_pseudomolecule_IMGAG_V3 35849466-35850028 H
          EGN_Mt090430 20090702
          Length = 75

 Score = 67.8 bits (164), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 39/57 (68%), Gaps = 7/57 (12%)

Query: 10 ITNGKCHSSPNGYRKSCWYEEEIEENLRWCFALNSILHTGASQYQDIALLDTKPFGK 66
          ITN   H  P       WYEE I+++L+W FALNS+LH G S YQ+IALLDTK FGK
Sbjct: 26 ITNNYDHDIP-------WYEEVIDDDLKWSFALNSVLHKGISDYQEIALLDTKRFGK 75