Jatropha Genome Database

JcCB0124931.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0124931.10 + phase: 0 /pseudo/partial
         (311 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g111520.1 Fumarate lyase; Adenylosuccinate lyase chr0...   466   e-132
IMGA|Medtr5g089050.1 Fumarate lyase chr05_pseudomolecule_IMGAG_V...   350   7e-97

>IMGA|Medtr7g111520.1 Fumarate lyase; Adenylosuccinate lyase
           chr07_pseudomolecule_IMGAG_V3 26222949-26228352 E
           EGN_Mt090430 20090702
          Length = 530

 Score =  466 bits (1200), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 223/310 (71%), Positives = 256/310 (82%), Gaps = 16/310 (5%)

Query: 17  LPFRCFPHSWTASPTTLGKEMAVFAVRLSEQRQEISQVKIKGKFAGAVGNYNAHIVAYPN 76
           +P     H   ASPTTLGKE+A+FAVRLS +R E+SQV+I GKFAGAVGNYNAH+ AYP+
Sbjct: 221 VPMLSRTHGQPASPTTLGKEIAIFAVRLSRERMELSQVEILGKFAGAVGNYNAHLAAYPD 280

Query: 77  VNWPLIAKEFVESLGLYFNPYVTQIEPHDYMARLFQAIIVFNNILIDFDRDIWGYISLAY 136
           VNWP IA+EFV+SLGL FNPYV QIE HDYMA++F + I FNNILIDFDRD+WGYISL Y
Sbjct: 281 VNWPCIAQEFVQSLGLGFNPYVAQIETHDYMAKIFHSFIQFNNILIDFDRDVWGYISLGY 340

Query: 137 FKQITKAGEIGSSTMPHKVNPIDFENSEGNLGKANGGLSHLSEKLPISRWQ--------- 187
           FKQ TKAGEIGSSTMPHKVNPIDFENSEGNLG ANGG SHLS KLPISRWQ         
Sbjct: 341 FKQTTKAGEIGSSTMPHKVNPIDFENSEGNLGVANGGFSHLSMKLPISRWQARLTLRDLT 400

Query: 188 ------EYGEGLGHSLLAYRSALQGIGKLQVNESRLSEDLNHSWEVLAEPIQTVMRRYGV 241
                   G   GHSLLAY+S LQGIGKLQVNESRLSEDL+  WEVLAEPIQTVMRRYGV
Sbjct: 401 DSTVLRNMGVNFGHSLLAYKSTLQGIGKLQVNESRLSEDLDQCWEVLAEPIQTVMRRYGV 460

Query: 242 PEPYEKLKELTRGRAVTKESIREFIEGLELPKETKAYLLELSPHNYVGAAIELGKTVDVT 301
           PEPYEKLKELTRG+A+TKESIR+FIEGL++P++ KAYLL+L+PH YVG+A+EL +TV+  
Sbjct: 461 PEPYEKLKELTRGKAITKESIRDFIEGLDIPQDAKAYLLKLTPHTYVGSAVELARTVEHE 520

Query: 302 M-NLINGVTA 310
           + N++NGV +
Sbjct: 521 VNNILNGVIS 530


>IMGA|Medtr5g089050.1 Fumarate lyase chr05_pseudomolecule_IMGAG_V3
           34561465-34556607 E EGN_Mt090430 20090702
          Length = 439

 Score =  350 bits (897), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 176/277 (63%), Positives = 202/277 (72%), Gaps = 43/277 (15%)

Query: 32  TLGKEMAVFAVRLSEQRQEISQVKIKGKFAGAVGNYNAHIVAYPNVNWPLIAKEFVESLG 91
           T G+E+A+FAV LS +R+E+SQV+I GKFAGAV NYNAH+ AYP+               
Sbjct: 187 THGQEIAIFAVTLSRERKELSQVEILGKFAGAVLNYNAHLAAYPD--------------- 231

Query: 92  LYFNPYVTQIEPHDYMARLFQAIIVFNNILIDFDRDIWGYISLAYFKQITKAGEIGSSTM 151
                    IE HDYMA++F + I FNNILIDFDRD+WGYISL YFKQ TKAGEI SSTM
Sbjct: 232 ---------IETHDYMAKIFHSFIQFNNILIDFDRDVWGYISLGYFKQTTKAGEIRSSTM 282

Query: 152 PHKVNPIDFENSEGNLGKANGGLSHLSEKLPISRWQ---------------EYGEGLGHS 196
           PHKVNPIDFENSEGNLG ANGG SHLS KLPISRWQ                 G   GHS
Sbjct: 283 PHKVNPIDFENSEGNLGVANGGFSHLSMKLPISRWQARLTLRDLTDSTVLRNMGVNFGHS 342

Query: 197 LLAYRSALQGIGKLQVNESRLSEDLNHSWEVLAEPIQT----VMRRYGVPEPYEKLKELT 252
           LLAY+S LQGIGKLQVNE+RLSEDL+  WEVLAEPIQT    + R  G  EPYEKLKELT
Sbjct: 343 LLAYKSTLQGIGKLQVNEARLSEDLDQCWEVLAEPIQTYANSLFRLCGDTEPYEKLKELT 402

Query: 253 RGRAVTKESIREFIEGLELPKETKAYLLELSPHNYVG 289
           RG+A+TKESIR+FIEGL++P++ KAYLL+L+ H YVG
Sbjct: 403 RGKAITKESIRDFIEGLDIPQDAKAYLLKLTLHTYVG 439