Jatropha Genome Database

JcCB0124611.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0124611.10 - phase: 0 /TE/partial
         (212 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f...   114   4e-26
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H...   105   2e-23
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy...   102   1e-22
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t...    99   2e-21
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H...    96   1e-20
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H...    94   3e-20
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu...    90   7e-19
IMGA|Medtr6g069750.1 Reverse transcriptase, putative chr06_pseud...    81   5e-16
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H...    62   2e-10

>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
           CU179634.6 87152-89450 H EGN_Mt090430 20090702
          Length = 688

 Score =  114 bits (285), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 59/146 (40%), Positives = 81/146 (55%), Gaps = 5/146 (3%)

Query: 24  EPECFEEAMESEHKRNWIKAMQDEMKSLHENKTFEXXXXXXXXXXXXXXXXWVFRIKQEE 83
           EP  +EEA        W KAM  E  +LH+N T+                 WV+++K + 
Sbjct: 335 EPNSYEEA---SMDPAWQKAMTQEFLALHDNNTW--TLTNLPKDKKSVGCRWVYKVKHKA 389

Query: 84  HSSQPRFKARLIVKGFNQRKGIDFDEIFSPVVKMTSIRTVLGMAASFDLEIEQMDVKTAI 143
             S  R+KARL+VKG+ Q  GID+ E FSPVVKMT++RT++  AA     I Q+DV  A 
Sbjct: 390 DGSVERYKARLVVKGYTQHHGIDYTETFSPVVKMTTVRTLIVAAAKKQWNIHQLDVNNAF 449

Query: 144 LHGDLEEKIYMEQPEGFIKKGERRLC 169
           LHGDL E++YM+ P G     +  +C
Sbjct: 450 LHGDLHEEVYMDIPPGLATPHKDLVC 475


>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
            chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
            EGN_Mt090430 20090702
          Length = 1396

 Score =  105 bits (261), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 6/157 (3%)

Query: 14   NEYVL-MTDGGEPECFEEAMESEHKRNWIKAMQDEMKSLHENKTFEXXXXXXXXXXXXXX 72
            + YVL +    EP+ + EA + E    W KAMQ E+++L +  T+               
Sbjct: 855  SSYVLSLHTHNEPKTYAEANKHE---CWQKAMQVELQALEQTGTWNFVDLPPNVKPIGCR 911

Query: 73   XXWVFRIKQEEHSSQPRFKARLIVKGFNQRKGIDFDEIFSPVVKMTSIRTVLGMAASFDL 132
              WVF+IK+    S  R+KARL+ KG+ Q +G+D+ + FSPV K+T++R ++ +A+    
Sbjct: 912  --WVFKIKRHADGSIERYKARLVAKGYTQVEGLDYFDTFSPVAKLTTVRLIIALASINHW 969

Query: 133  EIEQMDVKTAILHGDLEEKIYMEQPEGFIKKGERRLC 169
             + Q+DV  A LHGDL+E +YM  P G   K    +C
Sbjct: 970  HLHQLDVNNAFLHGDLQENVYMTLPPGISAKHSNTVC 1006


>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
            transferase, Ribonuclease H fold
            chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
            EGN_Mt090430 20090702
          Length = 1413

 Score =  102 bits (254), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/146 (34%), Positives = 82/146 (56%), Gaps = 5/146 (3%)

Query: 24   EPECFEEAMESEHKRNWIKAMQDEMKSLHENKTFEXXXXXXXXXXXXXXXXWVFRIKQEE 83
            EP  + EA + +    W +AMQ E+ +L    T++                W+++IK   
Sbjct: 883  EPTTYAEASKFD---CWKQAMQVELSALENTGTWKLVDLPPNVKPIVCR--WIYKIKHHA 937

Query: 84   HSSQPRFKARLIVKGFNQRKGIDFDEIFSPVVKMTSIRTVLGMAASFDLEIEQMDVKTAI 143
              S  R+KARL+ KG+NQ +G+D+ + +SPV K+T++RT++ +A   +  I Q+DV  A 
Sbjct: 938  DGSIERYKARLVAKGYNQIEGLDYFDTYSPVAKLTTVRTIIALAYMNNWHIHQLDVNNAF 997

Query: 144  LHGDLEEKIYMEQPEGFIKKGERRLC 169
            LHGDL+E +YM  P+G       ++C
Sbjct: 998  LHGDLQEDVYMIVPQGITPSKSNQVC 1023


>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
            transferase, Ribonuclease H fold AC235009.1 5302-2150 H
            EGN_Mt090430 20090702
          Length = 1051

 Score = 98.6 bits (244), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/136 (36%), Positives = 79/136 (58%), Gaps = 5/136 (3%)

Query: 24   EPECFEEAMESEHKRNWIKAMQDEMKSLHENKTFEXXXXXXXXXXXXXXXXWVFRIKQEE 83
            EP+ + EA + E    W +AMQ E+ +L    T++                W++++K   
Sbjct: 911  EPKSYTEANKFE---CWRQAMQVELTALENTGTWKIIDLPSNAKPIGCR--WIYKVKHHA 965

Query: 84   HSSQPRFKARLIVKGFNQRKGIDFDEIFSPVVKMTSIRTVLGMAASFDLEIEQMDVKTAI 143
              +  R+KARL+ KG+NQ +G+D+ + +SPV K T+IR VL +A+  +  + Q+DV  A 
Sbjct: 966  DGTIERYKARLVAKGYNQVEGLDYFDTYSPVAKHTTIRLVLALASLNNWHLHQLDVNNAF 1025

Query: 144  LHGDLEEKIYMEQPEG 159
            LHGDL+E +YM+ P G
Sbjct: 1026 LHGDLQEDVYMDIPPG 1041


>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
           EGN_Mt090430 20090702
          Length = 1275

 Score = 96.3 bits (238), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/146 (34%), Positives = 82/146 (56%), Gaps = 5/146 (3%)

Query: 24  EPECFEEAMESEHKRNWIKAMQDEMKSLHENKTFEXXXXXXXXXXXXXXXXWVFRIKQEE 83
           EP  + EA  S+H   W KAMQ E+ +L +  T++                W++++K   
Sbjct: 738 EPTTYVEA--SKHD-CWNKAMQAELLALEKTGTWDIVDLPAYVKPIGCR--WIYKVKHNA 792

Query: 84  HSSQPRFKARLIVKGFNQRKGIDFDEIFSPVVKMTSIRTVLGMAASFDLEIEQMDVKTAI 143
             S  R+KARL+ KG+ Q +G+D+ E +SPV K+T++R V+ +A+  +  + Q+DV  A 
Sbjct: 793 DGSIERYKARLVAKGYTQIEGLDYFETYSPVAKLTTVRLVIALASIHNWHLHQLDVNNAF 852

Query: 144 LHGDLEEKIYMEQPEGFIKKGERRLC 169
           LHG+L+E +YM  P G       ++C
Sbjct: 853 LHGELQEDVYMILPPGINIAKPHQVC 878


>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
            chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
            EGN_Mt090430 20090702
          Length = 1414

 Score = 94.4 bits (233), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/146 (31%), Positives = 83/146 (56%), Gaps = 5/146 (3%)

Query: 24   EPECFEEAMESEHKRNWIKAMQDEMKSLHENKTFEXXXXXXXXXXXXXXXXWVFRIKQEE 83
            EP+ + EA + +    W  AMQ E+++L +  T++                W++++K   
Sbjct: 892  EPKSYAEASKLD---CWKHAMQVELQALEKTGTWKLVDLPPNVKPIGCR--WIYKVKFHA 946

Query: 84   HSSQPRFKARLIVKGFNQRKGIDFDEIFSPVVKMTSIRTVLGMAASFDLEIEQMDVKTAI 143
              +  R+KARL+ KG+NQ +G+D+ + +SPV K+T++R V+ +++  +  + Q+DV  A 
Sbjct: 947  DGTVERYKARLVAKGYNQIEGLDYLDTYSPVAKLTTVRLVIALSSINNWHLHQLDVNNAF 1006

Query: 144  LHGDLEEKIYMEQPEGFIKKGERRLC 169
            LHGDL+E +YM  P G       ++C
Sbjct: 1007 LHGDLQEDVYMMVPPGIKSSKLNQVC 1032


>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
           chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
           EGN_Mt090430 20090702
          Length = 293

 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 60/95 (63%)

Query: 75  WVFRIKQEEHSSQPRFKARLIVKGFNQRKGIDFDEIFSPVVKMTSIRTVLGMAASFDLEI 134
           W+F+IK     S  R+KARL+ KG+NQ +G+D+ + +SPV K+T++R ++ +A+     +
Sbjct: 30  WIFKIKHNVDGSIERYKARLVAKGYNQIEGLDYFDTYSPVAKLTTVRFIIALASINHWHL 89

Query: 135 EQMDVKTAILHGDLEEKIYMEQPEGFIKKGERRLC 169
            Q DV  A LHG+L+E +YM  P G     +  +C
Sbjct: 90  HQFDVNNAFLHGELQEDVYMIIPPGVPHSHQDEVC 124


>IMGA|Medtr6g069750.1 Reverse transcriptase, putative
           chr06_pseudomolecule_IMGAG_V3 12976555-12977103 H
           EGN_Mt090430 20090702
          Length = 149

 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 28/114 (24%)

Query: 75  WVFRIKQEEHSSQPRFKARLIVKGFNQRKGIDFDEIFSPVVK------------------ 116
           W+++IK     S  R+KARL+VKG+NQ +G D+ + +SPV K                  
Sbjct: 30  WIYKIKHYADGSIQRYKARLVVKGYNQVEGWDYFDTYSPVAKLTTARLVVKGYNQVEGWD 89

Query: 117 ----------MTSIRTVLGMAASFDLEIEQMDVKTAILHGDLEEKIYMEQPEGF 160
                     MT++RTV+ +A+     I ++D  +A LHGDL+E +YM  P+G 
Sbjct: 90  YFDTYSLVAKMTTVRTVIALASINQWHIHKLDANSAFLHGDLQEDVYMLIPQGI 143


>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
           EGN_Mt090430 20090702
          Length = 710

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 5/98 (5%)

Query: 24  EPECFEEAMESEHKRNWIKAMQDEMKSLHENKTFEXXXXXXXXXXXXXXXXWVFRIKQEE 83
           EP+ + EA + E    W +AMQ E+ +L    T++                W+++IK   
Sbjct: 291 EPKTYTEANKFE---CWRQAMQVELTALENTGTWKIIDSPPNAKPIGCR--WIYKIKHNA 345

Query: 84  HSSQPRFKARLIVKGFNQRKGIDFDEIFSPVVKMTSIR 121
             +  R+KARL+ KG+NQ +G+D+ + +SPV K T+IR
Sbjct: 346 DDTIERYKARLVAKGYNQVEGLDYFDTYSPVAKHTTIR 383