Jatropha Genome Database
- JcCB0124231.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0124231.10 - phase: 0 /TE/partial
(901 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 563 e-160
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 558 e-159
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 551 e-157
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 543 e-154
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 372 e-103
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 370 e-102
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po... 340 2e-93
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu... 308 6e-84
IMGA|Medtr4g157500.1 polyprotein-like, putative chr04_pseudomole... 267 2e-71
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po... 243 2e-64
IMGA|Medtr8g044880.1 polyprotein-like, putative chr08_pseudomole... 169 5e-42
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 163 3e-40
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 153 4e-37
IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA po... 132 1e-30
IMGA|Medtr6g069750.1 Reverse transcriptase, putative chr06_pseud... 124 2e-28
IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H... 115 1e-25
IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA po... 109 5e-24
IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H... 92 1e-18
IMGA|Medtr5g099250.1 Reverse transcriptase, RNA-dependent DNA po... 89 1e-17
IMGA|Medtr5g086740.1 Reverse transcriptase, RNA-dependent DNA po... 71 2e-12
IMGA|Medtr4g025100.1 Integrase, catalytic region; Zinc finger, C... 70 5e-12
IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein, chr0... 69 9e-12
IMGA|AC235756_37.1 Copia protein, related AC235756.1 212505-2122... 69 1e-11
IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA po... 67 3e-11
IMGA|Medtr4g045170.1 hypothetical protein chr04_pseudomolecule_I... 66 9e-11
IMGA|Medtr3g162300.1 retrotransposon like protein, putative chr0... 65 1e-10
IMGA|Medtr8g012170.1 polyprotein, putative chr08_pseudomolecule_... 65 1e-10
IMGA|Medtr4g104330.1 hypothetical protein chr04_pseudomolecule_I... 65 2e-10
IMGA|Medtr7g135120.1 Copia protein, related chr07_pseudomolecule... 61 3e-09
IMGA|Medtr8g096240.1 hypothetical protein chr08_pseudomolecule_I... 58 2e-08
IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative chr... 55 1e-07
IMGA|Medtr8g043360.1 Copia protein, related chr08_pseudomolecule... 54 3e-07
IMGA|Medtr3g097190.1 copia-type polyprotein, putative chr03_pseu... 53 7e-07
IMGA|Medtr8g081950.1 lectin receptor kinase, related chr08_pseud... 52 9e-07
IMGA|Medtr7g021510.1 Integrase, catalytic region; Zinc finger, C... 52 1e-06
IMGA|Medtr5g015200.1 Helix-turn-helix, AraC type chr05_pseudomol... 51 2e-06
IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG... 51 2e-06
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 563 bits (1451), Expect = e-160, Method: Compositional matrix adjust.
Identities = 276/513 (53%), Positives = 355/513 (69%)
Query: 389 AFLAQLTIQVEPTSYDQAVLHPHWQKAMDLELQTLERNHTGSLVSLPAGHKPIGCRWVYK 448
+F++ L EPT+Y +A H W KAM EL LE+ T +V LPA KPIGCRW+YK
Sbjct: 728 SFISSLQTTPEPTTYVEASKHDCWNKAMQAELLALEKTGTWDIVDLPAYVKPIGCRWIYK 787
Query: 449 IKYNSDGSIKRYKARLVAKGYTQVEGIDXRETFSPTAKLTTPRCLLTVAAARGWFTHQLD 508
+K+N+DGSI+RYKARLVAKGYTQ+EG+D ET+SP AKLTT R ++ +A+ W HQLD
Sbjct: 788 VKHNADGSIERYKARLVAKGYTQIEGLDYFETYSPVAKLTTVRLVIALASIHNWHLHQLD 847
Query: 509 VQNAFLHGDLHEVVYMIPPPRLRQQGENTVCRLHKSLYGLKQASRNWFSTFSIAIQQAGY 568
V NAFLHG+L E VYMI PP + + VC+L KSLYGLKQASR W+ + + Q Y
Sbjct: 848 VNNAFLHGELQEDVYMILPPGINIAKPHQVCKLKKSLYGLKQASRQWYEKLTSVLIQQHY 907
Query: 569 TQSKADYSLFIKVQGTSFTAVLIYVDDILLTGNNLREIHQLKQTLLKRFLIKDLGNLKYF 628
Q+ +D+SLFIK SFT +L+YVDDI+L G +L E +K L F IKDLG LKYF
Sbjct: 908 IQASSDHSLFIKKSSDSFTILLVYVDDIILAGTSLLEFQNIKSILDTSFKIKDLGQLKYF 967
Query: 629 LGIEFSRSQQGIFMSQRKYALDILQDTGLLGAKPEAFPMEQQLKLTSTDGEILHNPTKFR 688
LGIE + S+ GI + QRKY LD+L D+G +G+KP + P + KL + +R
Sbjct: 968 LGIEVAHSKLGISLYQRKYCLDLLHDSGHIGSKPISTPSDPSTKLHHDTSTPYDDIPAYR 1027
Query: 689 RLVGRLIYLTVTRPEIVYAVRTLSQFMGEPRLPHWNAALRLLRYIKGTPGQGLLLPSTNN 748
RLVGRL+YL TRP+I + + LSQF+ P + H NAALR LRY+K PG+GL P ++
Sbjct: 1028 RLVGRLLYLNNTRPDITFITQQLSQFLSNPTIAHHNAALRTLRYLKSCPGKGLFFPRNSS 1087
Query: 749 LELKAYCDSDWAGCRMTRRSISGYCVFLGTSMIXWKSKKXTNVSRSSAEAEYRAMTNACL 808
L L+ + D+DWAGC TR+S++G C FLG S+I W++KK T VSRSS+EAEYRA+ +A
Sbjct: 1088 LTLQGFSDADWAGCLDTRKSVTGQCFFLGNSLISWRTKKQTTVSRSSSEAEYRALASATC 1147
Query: 809 EITWLQYILRNLGVKIMKSAKLFCDNQATLHIAANPVFHECTKHIKIDCHIVREKLQLGF 868
EI WL Y+L +L + K L+CDNQ+ LHIAANPVFHE TKH++IDCHIVREKLQ G
Sbjct: 1148 EIQWLLYLLNDLHITCSKPPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKLQAGV 1207
Query: 869 IQPCYVPTQMQLADIFTKALGREQFEYLRSKLG 901
++ V +Q Q+AD FTKAL + F L SKLG
Sbjct: 1208 LKLLPVSSQDQIADFFTKALLPKTFSLLLSKLG 1240
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 558 bits (1437), Expect = e-159, Method: Compositional matrix adjust.
Identities = 272/505 (53%), Positives = 354/505 (70%)
Query: 389 AFLAQLTIQVEPTSYDQAVLHPHWQKAMDLELQTLERNHTGSLVSLPAGHKPIGCRWVYK 448
+++ L EP +Y +A H WQKAM +ELQ LE+ T + V LP KPIGCRWV+K
Sbjct: 856 SYVLSLHTHNEPKTYAEANKHECWQKAMQVELQALEQTGTWNFVDLPPNVKPIGCRWVFK 915
Query: 449 IKYNSDGSIKRYKARLVAKGYTQVEGIDXRETFSPTAKLTTPRCLLTVAAARGWFTHQLD 508
IK ++DGSI+RYKARLVAKGYTQVEG+D +TFSP AKLTT R ++ +A+ W HQLD
Sbjct: 916 IKRHADGSIERYKARLVAKGYTQVEGLDYFDTFSPVAKLTTVRLIIALASINHWHLHQLD 975
Query: 509 VQNAFLHGDLHEVVYMIPPPRLRQQGENTVCRLHKSLYGLKQASRNWFSTFSIAIQQAGY 568
V NAFLHGDL E VYM PP + + NTVC+L+KSLYGLKQASR W+ + + + Y
Sbjct: 976 VNNAFLHGDLQENVYMTLPPGISAKHSNTVCKLNKSLYGLKQASRKWYDKLTSILLKHQY 1035
Query: 569 TQSKADYSLFIKVQGTSFTAVLIYVDDILLTGNNLREIHQLKQTLLKRFLIKDLGNLKYF 628
TQ+ +D+SLF K GTS+T +L+YVDDI+L G++L E +K L F IKDLG LK+F
Sbjct: 1036 TQAHSDHSLFTKKTGTSYTILLVYVDDIILAGDSLEEFQYIKSILDTLFKIKDLGQLKFF 1095
Query: 629 LGIEFSRSQQGIFMSQRKYALDILQDTGLLGAKPEAFPMEQQLKLTSTDGEILHNPTKFR 688
LG+E + SQ GI + Q+KY LD+L D+G +G+KP + P + LKL + +R
Sbjct: 1096 LGLEVAHSQLGISLCQKKYCLDLLADSGTIGSKPASTPSDPSLKLHKDGALPYEDIPSYR 1155
Query: 689 RLVGRLIYLTVTRPEIVYAVRTLSQFMGEPRLPHWNAALRLLRYIKGTPGQGLLLPSTNN 748
RL+GRL+YL TRP+I Y + LSQF+ P H +AALR+LRY+K PG+GL P +
Sbjct: 1156 RLIGRLLYLNTTRPDITYITQQLSQFLSAPTHTHHSAALRVLRYLKNCPGKGLFFPRNSP 1215
Query: 749 LELKAYCDSDWAGCRMTRRSISGYCVFLGTSMIXWKSKKXTNVSRSSAEAEYRAMTNACL 808
L+L+ Y D+DWAGC TRRSISG C FLG S+I W++KK VSRSS+EAEYRA+ +A
Sbjct: 1216 LQLQGYSDADWAGCLDTRRSISGQCFFLGNSLISWRTKKQVTVSRSSSEAEYRALASATC 1275
Query: 809 EITWLQYILRNLGVKIMKSAKLFCDNQATLHIAANPVFHECTKHIKIDCHIVREKLQLGF 868
E+ WL Y+L++L V K LFCDNQ+ LHIAANPVFHE TKH++IDCHIVREKL G
Sbjct: 1276 ELQWLIYLLQDLHVTCTKLPVLFCDNQSALHIAANPVFHERTKHLEIDCHIVREKLHSGI 1335
Query: 869 IQPCYVPTQMQLADIFTKALGREQF 893
++ V ++ Q+AD FTK+L + F
Sbjct: 1336 LKLLPVSSKEQVADFFTKSLHPQPF 1360
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 551 bits (1420), Expect = e-157, Method: Compositional matrix adjust.
Identities = 265/512 (51%), Positives = 354/512 (69%)
Query: 390 FLAQLTIQVEPTSYDQAVLHPHWQKAMDLELQTLERNHTGSLVSLPAGHKPIGCRWVYKI 449
F+ L Q EP SY +A W+ AM +ELQ LE+ T LV LP KPIGCRW+YK+
Sbjct: 883 FVMSLHTQPEPKSYAEASKLDCWKHAMQVELQALEKTGTWKLVDLPPNVKPIGCRWIYKV 942
Query: 450 KYNSDGSIKRYKARLVAKGYTQVEGIDXRETFSPTAKLTTPRCLLTVAAARGWFTHQLDV 509
K+++DG+++RYKARLVAKGY Q+EG+D +T+SP AKLTT R ++ +++ W HQLDV
Sbjct: 943 KFHADGTVERYKARLVAKGYNQIEGLDYLDTYSPVAKLTTVRLVIALSSINNWHLHQLDV 1002
Query: 510 QNAFLHGDLHEVVYMIPPPRLRQQGENTVCRLHKSLYGLKQASRNWFSTFSIAIQQAGYT 569
NAFLHGDL E VYM+ PP ++ N VC+L KSLYGLKQASR W+ + + YT
Sbjct: 1003 NNAFLHGDLQEDVYMMVPPGIKSSKLNQVCKLTKSLYGLKQASRKWYEKLTSVLFDQHYT 1062
Query: 570 QSKADYSLFIKVQGTSFTAVLIYVDDILLTGNNLREIHQLKQTLLKRFLIKDLGNLKYFL 629
Q+ +DYSLF+K TSFT +L+YVDDI+L GN++ E +K L F IKDLG LKYFL
Sbjct: 1063 QATSDYSLFVKKTSTSFTVLLVYVDDIILAGNSISEFSHIKSILDSLFKIKDLGQLKYFL 1122
Query: 630 GIEFSRSQQGIFMSQRKYALDILQDTGLLGAKPEAFPMEQQLKLTSTDGEILHNPTKFRR 689
GIE + S+ GI + QRKY LD+L D G LG+KP + P + +KL + RR
Sbjct: 1123 GIEVAHSKLGISLCQRKYCLDLLADIGSLGSKPISTPSDSSIKLHLDSSSPFEDVPACRR 1182
Query: 690 LVGRLIYLTVTRPEIVYAVRTLSQFMGEPRLPHWNAALRLLRYIKGTPGQGLLLPSTNNL 749
LVGRL+YL TRP+I + + LSQF+ +P H +AALR+L+Y+K PG+GL P +++L
Sbjct: 1183 LVGRLLYLNNTRPDITFITQQLSQFLSQPTQAHHSAALRVLKYLKSCPGKGLFFPRSSSL 1242
Query: 750 ELKAYCDSDWAGCRMTRRSISGYCVFLGTSMIXWKSKKXTNVSRSSAEAEYRAMTNACLE 809
L+ + D+DWAGC TRRSISG C FLG S+I W++KK VS+SS+EAEYRA+ +A E
Sbjct: 1243 NLQGFSDADWAGCIDTRRSISGQCFFLGNSLISWRTKKQITVSKSSSEAEYRALASATCE 1302
Query: 810 ITWLQYILRNLGVKIMKSAKLFCDNQATLHIAANPVFHECTKHIKIDCHIVREKLQLGFI 869
+ W+ Y+L++L K L+CDNQ+ +HIA NPVFHE TKH++IDCH++R+KLQ G +
Sbjct: 1303 LQWILYLLKDLHTTCPKLPVLYCDNQSAIHIANNPVFHERTKHLEIDCHLIRDKLQSGVL 1362
Query: 870 QPCYVPTQMQLADIFTKALGREQFEYLRSKLG 901
+ V +Q Q+AD FTKAL + F L SKLG
Sbjct: 1363 KLLTVSSQDQVADFFTKALLPKPFNILLSKLG 1394
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 543 bits (1399), Expect = e-154, Method: Compositional matrix adjust.
Identities = 275/513 (53%), Positives = 344/513 (67%)
Query: 389 AFLAQLTIQVEPTSYDQAVLHPHWQKAMDLELQTLERNHTGSLVSLPAGHKPIGCRWVYK 448
AF L EPT+Y +A W++AM +EL LE T LV LP KPI CRW+YK
Sbjct: 873 AFALSLDSHTEPTTYAEASKFDCWKQAMQVELSALENTGTWKLVDLPPNVKPIVCRWIYK 932
Query: 449 IKYNSDGSIKRYKARLVAKGYTQVEGIDXRETFSPTAKLTTPRCLLTVAAARGWFTHQLD 508
IK+++DGSI+RYKARLVAKGY Q+EG+D +T+SP AKLTT R ++ +A W HQLD
Sbjct: 933 IKHHADGSIERYKARLVAKGYNQIEGLDYFDTYSPVAKLTTVRTIIALAYMNNWHIHQLD 992
Query: 509 VQNAFLHGDLHEVVYMIPPPRLRQQGENTVCRLHKSLYGLKQASRNWFSTFSIAIQQAGY 568
V NAFLHGDL E VYMI P + N VC+L KSLYGLKQASR W+ + + Y
Sbjct: 993 VNNAFLHGDLQEDVYMIVPQGITPSKSNQVCKLIKSLYGLKQASRKWYEKLTSLLVHHHY 1052
Query: 569 TQSKADYSLFIKVQGTSFTAVLIYVDDILLTGNNLREIHQLKQTLLKRFLIKDLGNLKYF 628
QS +D+SLFIK TSFTA+L+YVDD+++TG +L E +K L IKDLG LKYF
Sbjct: 1053 LQSTSDHSLFIKKTYTSFTALLVYVDDVIITGTSLSEFQDIKAILHSALEIKDLGQLKYF 1112
Query: 629 LGIEFSRSQQGIFMSQRKYALDILQDTGLLGAKPEAFPMEQQLKLTSTDGEILHNPTKFR 688
LG+E + S QGI + QRKY LD+L D G L AKP + P + KL + G + +R
Sbjct: 1113 LGLEVAHSSQGISLCQRKYCLDLLTDIGFLAAKPASTPSDPSCKLHADGGPPFSDIPSYR 1172
Query: 689 RLVGRLIYLTVTRPEIVYAVRTLSQFMGEPRLPHWNAALRLLRYIKGTPGQGLLLPSTNN 748
RL+GRLIYLT TRP I +A + LSQF+ P H+ AA R+LRY+K +PGQGL P ++
Sbjct: 1173 RLIGRLIYLTNTRPYITFATQQLSQFLNSPTEKHYIAATRILRYLKKSPGQGLFFPRDSS 1232
Query: 749 LELKAYCDSDWAGCRMTRRSISGYCVFLGTSMIXWKSKKXTNVSRSSAEAEYRAMTNACL 808
L L Y D+DWAGC +RRSISG C FLG S+I WK+KK VSRSS+EAEYRA+ A
Sbjct: 1233 LFLSGYSDADWAGCLDSRRSISGQCFFLGHSLISWKTKKQLTVSRSSSEAEYRALGAATC 1292
Query: 809 EITWLQYILRNLGVKIMKSAKLFCDNQATLHIAANPVFHECTKHIKIDCHIVREKLQLGF 868
E+ WL Y+L +L V +K L+CDNQ+ LHIAANPVFHE TKH++IDCH+VREKLQ
Sbjct: 1293 ELQWLLYLLHDLHVTTVKLHVLYCDNQSALHIAANPVFHERTKHLEIDCHLVREKLQACI 1352
Query: 869 IQPCYVPTQMQLADIFTKALGREQFEYLRSKLG 901
++ V + QLAD FTK L + F L KLG
Sbjct: 1353 MKLLPVTSADQLADFFTKPLLPQPFHTLLFKLG 1385
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 372 bits (954), Expect = e-103, Method: Compositional matrix adjust.
Identities = 212/512 (41%), Positives = 286/512 (55%), Gaps = 92/512 (17%)
Query: 390 FLAQLTIQVEPTSYDQAVLHPHWQKAMDLELQTLERNHTGSLVSLPAGHKPIGCRWVYKI 449
F+ L EP +Y +A W++AM +EL LE T ++ P KPIGCRW+YKI
Sbjct: 282 FILSLHAHNEPKTYTEANKFECWRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYKI 341
Query: 450 KYNSDGSIKRYKARLVAKGYTQVEGIDXRETFSPTAKLTTPRCLLTVAAARGWFTHQLDV 509
K+N+D +I+RYKARLV A+G+ +Q++
Sbjct: 342 KHNADDTIERYKARLV---------------------------------AKGY--NQVEG 366
Query: 510 QNAFLHGDLHEVVYMIPPPRLRQQGENTVCRLHKSLYGLKQASRNWFSTFSIAIQQAGYT 569
+ F D + V ++T RL ASR W+ + + GY
Sbjct: 367 LDYF---DTYSPV-----------AKHTTIRL---------ASRKWYEKLASLLVNHGYK 403
Query: 570 QSKADYSLFIKVQGTSFTAVLIYVDDILLTGNNLREIHQLKQTLLKRFLIKDLGNLKYFL 629
Q+ AD+SLFIK T FTA+L+YVDDI+L GN+L E +K L F IKDLG LKYFL
Sbjct: 404 QASADHSLFIKHSTTQFTALLVYVDDIILAGNSLDEFTFIKNILHNSFKIKDLGQLKYFL 463
Query: 630 GIEFSRSQQGIFMSQRKYALDILQDTGLLGAKPEAFPMEQQLKLTSTDGEILHNPTKFRR 689
G+E + S+ GI + QRKY LD+L DTGLL +KP A P + +KL D + + +RR
Sbjct: 464 GLEVAHSKLGISLCQRKYGLDLLSDTGLLDSKPVATPSDPSIKLYHDDSPLYTDIPAYRR 523
Query: 690 LVGRLIYLTVTRPEIVYAVRTLSQFMGEPRLPHWNAALRLLRYIKGTPGQGLLLPSTNNL 749
LVGRL+YL TRP+I + + LSQF+ +P H+NAALR+LRY+K PG+GL P ++
Sbjct: 524 LVGRLLYLNATRPDITFITQQLSQFLSKPTQTHYNAALRVLRYLKTCPGKGLHFPRSSLP 583
Query: 750 ELKAYCDSDWAGCRMTRRSISGYCVFLGTSMIXWKSKKXTNVSRSSAEAEYRAMTNACLE 809
++ Y D+DWAGCR TRRSISG C FLG S+I W++KK VSRSS+EAEYRA+ A
Sbjct: 584 YIQGYSDADWAGCRDTRRSISGQCFFLGDSLISWRTKKQLTVSRSSSEAEYRALGAA--- 640
Query: 810 ITWLQYILRNLGVKIMKSAKLFCDNQATLHIAANPVFHECTKHIKIDCHIVREKLQLGFI 869
+NPVFHE TKH++IDCHIVREKL G +
Sbjct: 641 -------------------------------TSNPVFHERTKHLEIDCHIVREKLAAGIM 669
Query: 870 QPCYVPTQMQLADIFTKALGREQFEYLRSKLG 901
+ + ++ QLAD FTK++ + F L KLG
Sbjct: 670 KLLPISSKNQLADCFTKSILPQPFNSLLFKLG 701
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 370 bits (949), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/363 (49%), Positives = 243/363 (66%)
Query: 388 RAFLAQLTIQVEPTSYDQAVLHPHWQKAMDLELQTLERNHTGSLVSLPAGHKPIGCRWVY 447
++F+ ++ EP SY++A + P WQKAM E L N+T +L +LP K +GCRWVY
Sbjct: 324 QSFIMNISHDCEPNSYEEASMDPAWQKAMTQEFLALHDNNTWTLTNLPKDKKSVGCRWVY 383
Query: 448 KIKYNSDGSIKRYKARLVAKGYTQVEGIDXRETFSPTAKLTTPRCLLTVAAARGWFTHQL 507
K+K+ +DGS++RYKARLV KGYTQ GID ETFSP K+TT R L+ AA + W HQL
Sbjct: 384 KVKHKADGSVERYKARLVVKGYTQHHGIDYTETFSPVVKMTTVRTLIVAAAKKQWNIHQL 443
Query: 508 DVQNAFLHGDLHEVVYMIPPPRLRQQGENTVCRLHKSLYGLKQASRNWFSTFSIAIQQAG 567
DV NAFLHGDLHE VYM PP L ++ VC+L+KSLYGLKQASR W+ + A+ G
Sbjct: 444 DVNNAFLHGDLHEEVYMDIPPGLATPHKDLVCKLNKSLYGLKQASRQWYEKLTEALHTRG 503
Query: 568 YTQSKADYSLFIKVQGTSFTAVLIYVDDILLTGNNLREIHQLKQTLLKRFLIKDLGNLKY 627
Y S DYSLF K +G S + +YVDDILLTG + EI +LK+ L +F IKDLG L Y
Sbjct: 504 YEHSPHDYSLFYKKRGASNVFLGVYVDDILLTGTDTNEIDELKRFLDNQFKIKDLGRLHY 563
Query: 628 FLGIEFSRSQQGIFMSQRKYALDILQDTGLLGAKPEAFPMEQQLKLTSTDGEILHNPTKF 687
FLG+E GI +SQRK+ LD+L++ P + P++ +KL S +G++L +PT +
Sbjct: 564 FLGLEVLYKDDGILVSQRKFVLDLLKEFNCDHMAPLSSPLDPNIKLRSHEGKVLDDPTYY 623
Query: 688 RRLVGRLIYLTVTRPEIVYAVRTLSQFMGEPRLPHWNAALRLLRYIKGTPGQGLLLPSTN 747
R+L+G+L +LT TR ++ Y V+ LSQ+M +PR PH +AA +LRY+K P G+ + S
Sbjct: 624 RKLIGKLNFLTHTRLDLAYGVQLLSQYMQDPREPHLHAAFHMLRYLKKDPTLGVFMSSAA 683
Query: 748 NLE 750
N +
Sbjct: 684 NFD 686
>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33218578-33217607 H EGN_Mt090430 20090702
Length = 309
Score = 340 bits (871), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 166/314 (52%), Positives = 214/314 (68%), Gaps = 14/314 (4%)
Query: 588 AVLIYVDDILLTGNNLREIHQLKQTLLKRFLIKDLGNLKYFLGIEFSRSQQGIFMSQRKY 647
AVLIYVDD+++ GN+ I KQ L + F +KDLG LKYFLG+E +R G+FM QRKY
Sbjct: 2 AVLIYVDDLVIAGNDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELARGANGLFMCQRKY 61
Query: 648 ALDILQDTGLLGAKPEAFPMEQQLKLTSTDGEILHNPTKFRRLVGRLIYLTVTRPEIVYA 707
LDIL + +L KP FPMEQ KL G +P+++RRL+ RLIYLT+ PEI Y+
Sbjct: 62 TLDILDECKMLDCKPSTFPMEQNQKLVLDKGPTCSDPSRYRRLISRLIYLTIMHPEITYS 121
Query: 708 VRTLSQFMGEPRLPHWNAALRLLRYIKGTPGQGLLLPSTNNLELKAYCDSDWAGCRMTRR 767
V L+ +R+LRY+K +PGQG++LP N+L+L AYCDSDWA C +TRR
Sbjct: 122 VHILT--------------MRVLRYLKSSPGQGIILPKENDLQLVAYCDSDWASCPLTRR 167
Query: 768 SISGYCVFLGTSMIXWKSKKXTNVSRSSAEAEYRAMTNACLEITWLQYILRNLGVKIMKS 827
S SGY + LG++ I WK+KK + VS+SS+EAEYRAM A E+ WL+ +L +L V
Sbjct: 168 STSGYLMKLGSAPISWKTKKQSTVSKSSSEAEYRAMGQAVSEVIWLRSLLSSLQVHYDSP 227
Query: 828 AKLFCDNQATLHIAANPVFHECTKHIKIDCHIVREKLQLGFIQPCYVPTQMQLADIFTKA 887
L CDNQA +H+AANPV+HE TKHI++DCH +R LQ G I YVPT+ Q ADIFTKA
Sbjct: 228 TVLLCDNQAAMHLAANPVYHERTKHIEVDCHFIRTHLQEGTISTSYVPTKKQQADIFTKA 287
Query: 888 LGREQFEYLRSKLG 901
LG +QF+ L KLG
Sbjct: 288 LGAKQFQELTFKLG 301
>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
EGN_Mt090430 20090702
Length = 293
Score = 308 bits (790), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 147/291 (50%), Positives = 199/291 (68%)
Query: 416 MDLELQTLERNHTGSLVSLPAGHKPIGCRWVYKIKYNSDGSIKRYKARLVAKGYTQVEGI 475
M E+ LE+ T +V LP KPIGCRW++KIK+N DGSI+RYKARLVAKGY Q+EG+
Sbjct: 1 MQSEITALEQTGTWKIVDLPPAVKPIGCRWIFKIKHNVDGSIERYKARLVAKGYNQIEGL 60
Query: 476 DXRETFSPTAKLTTPRCLLTVAAARGWFTHQLDVQNAFLHGDLHEVVYMIPPPRLRQQGE 535
D +T+SP AKLTT R ++ +A+ W HQ DV NAFLHG+L E VYMI PP + +
Sbjct: 61 DYFDTYSPVAKLTTVRFIIALASINHWHLHQFDVNNAFLHGELQEDVYMIIPPGVPHSHQ 120
Query: 536 NTVCRLHKSLYGLKQASRNWFSTFSIAIQQAGYTQSKADYSLFIKVQGTSFTAVLIYVDD 595
+ VC+L+KSLYGL+QAS W+ + + GY Q+ +D SLFIK +SFT +L+YVDD
Sbjct: 121 DEVCKLNKSLYGLQQASMKWYEKLTNILISTGYKQAASDASLFIKHTHSSFTILLVYVDD 180
Query: 596 ILLTGNNLREIHQLKQTLLKRFLIKDLGNLKYFLGIEFSRSQQGIFMSQRKYALDILQDT 655
++L G+ L E + +K L F IKD+G LKYFLG+E + S+ GI + QRKY LD+L+D+
Sbjct: 181 VILAGDTLSEFNTIKGVLHDAFKIKDIGQLKYFLGLEVAHSKSGISLCQRKYCLDLLEDS 240
Query: 656 GLLGAKPEAFPMEQQLKLTSTDGEILHNPTKFRRLVGRLIYLTVTRPEIVY 706
GL G+KP P + +KL + + +RRL+GRL+YL TRP+I Y
Sbjct: 241 GLTGSKPMNTPSDPSIKLHNDSAPSFPDIPAYRRLIGRLLYLNTTRPDITY 291
>IMGA|Medtr4g157500.1 polyprotein-like, putative
chr04_pseudomolecule_IMGAG_V3 39269652-39268814 H
EGN_Mt090430 20090702
Length = 260
Score = 267 bits (682), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 126/259 (48%), Positives = 176/259 (67%)
Query: 577 LFIKVQGTSFTAVLIYVDDILLTGNNLREIHQLKQTLLKRFLIKDLGNLKYFLGIEFSRS 636
+F K +SFT +L+YVDDI+L GN+L E +K L F IKDLG LKY LG+E + S
Sbjct: 1 MFTKHTDSSFTILLVYVDDIILAGNSLSEFQHIKSILHSSFKIKDLGQLKYVLGLEVAHS 60
Query: 637 QQGIFMSQRKYALDILQDTGLLGAKPEAFPMEQQLKLTSTDGEILHNPTKFRRLVGRLIY 696
+QGI + QRKY LD+L D+G + +KP + + LKL + + +RRL+GRL+Y
Sbjct: 61 KQGISLCQRKYCLDLLSDSGTINSKPVSTSSDASLKLHNDSSPPYEDIPSYRRLIGRLLY 120
Query: 697 LTVTRPEIVYAVRTLSQFMGEPRLPHWNAALRLLRYIKGTPGQGLLLPSTNNLELKAYCD 756
L TRP+I + + LSQF+ +P H NAALR+L+Y+K PG+GL P ++L L+ + D
Sbjct: 121 LNSTRPDITFITQQLSQFLSKPTQTHHNAALRVLKYLKCCPGKGLFFPRNSSLHLQGFSD 180
Query: 757 SDWAGCRMTRRSISGYCVFLGTSMIXWKSKKXTNVSRSSAEAEYRAMTNACLEITWLQYI 816
DWAGC +RRSISG C F+G S+I W++KK T VSRSS+EAEYRA+ +A E+ W+ Y+
Sbjct: 181 VDWAGCVDSRRSISGQCFFIGNSLISWRTKKQTTVSRSSSEAEYRALASATCELQWILYL 240
Query: 817 LRNLGVKIMKSAKLFCDNQ 835
L++L ++ K LFCDNQ
Sbjct: 241 LKDLNIQSSKLPVLFCDNQ 259
>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
H EGN_Mt090430 20090702
Length = 509
Score = 243 bits (621), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 159/489 (32%), Positives = 217/489 (44%), Gaps = 133/489 (27%)
Query: 389 AFLAQLTIQVEPTSYDQAVLHPHWQKAMDLELQTLERNHTGSLVSLPAGHKPIGCRWVYK 448
+F ++ +EP+S+ QA P WQ AM EL LE T W++
Sbjct: 142 SFTLAISSDIEPSSFKQAQSDPRWQLAMSPELSALEATGT----------------WIF- 184
Query: 449 IKYNSDGSIKRYKARLVAKGYTQVEGIDXRETFSPTAKLTTPRCLLTVAAARGWFTHQLD 508
+D SP W D
Sbjct: 185 --------------------------VDPPPNISPIGS--------------KWIFRLND 204
Query: 509 VQNAFLHGDLHEVVYMIPPPRLRQQGENTVCRLHKSLYGLKQASRNWFSTFSIAIQQAGY 568
N FLHGDL E VYM PP + VC+L KSLYGLKQASR WF + G+
Sbjct: 205 ANNTFLHGDLQEDVYMHPPQGVSPPRPGQVCKLLKSLYGLKQASRRWFEKLISLLLTIGF 264
Query: 569 TQSKADYSLFIKVQGTSFTAVLIYVDDILLTGNNLREIHQLKQTLLKRFLIKDLGNLKYF 628
Q+ AD+S I+ TSFTA+LIYV
Sbjct: 265 VQASADHSFLIRASPTSFTALLIYV----------------------------------- 289
Query: 629 LGIEFSRSQQGIFMSQRKYALDILQDTGLLGAKPEAFPMEQQLKLTSTDGEILHNPTKFR 688
+ S +GI + QRKY LD+L D GL K + P++ L DG + +R
Sbjct: 290 -----AHSSKGISLCQRKYCLDLLSDAGLTTCKSVSTPLDYACLLHIDDGPPFDDVLAYR 344
Query: 689 RLVGRLIYLTVTRPEIVYAVRTLSQFMGEPRLPHWNAALRLLRYIKGTPGQGLLLPSTNN 748
L+G L+YLT TRP+I +A + LSQFM +P + H AL +LRY++ PG+GL P T+
Sbjct: 345 CLIGCLLYLTTTRPDISFATQQLSQFMAKPSVNHHRTALCVLRYLQVCPGRGLFFPRTSE 404
Query: 749 LELKAYCDSDWAGCRMTRRS------ISGYCVFLGTSMIXWKSKKXTNVSRSSAEAEYRA 802
++L + D+DW GC +RRS I + FL + +
Sbjct: 405 MQLLGFSDADWGGCVDSRRSLAFQEAIHRFLFFLRSGI---------------------- 442
Query: 803 MTNACLEITWLQYILRNLGVKIMKSAKLFCDNQATLHIAANPVFHECTKHIKIDCHIVRE 862
+C I+ + + ++ + I L+CDNQ+ LHIAANPVF+E TKH+ IDCHIVRE
Sbjct: 443 ---SCFSISHPRTPMAHIRLSI-----LYCDNQSALHIAANPVFYERTKHLDIDCHIVRE 494
Query: 863 KLQLGFIQP 871
K+Q G P
Sbjct: 495 KVQRGSDAP 503
>IMGA|Medtr8g044880.1 polyprotein-like, putative
chr08_pseudomolecule_IMGAG_V3 10147539-10149356 H
EGN_Mt090430 20090702
Length = 196
Score = 169 bits (429), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 86/176 (48%), Positives = 118/176 (67%), Gaps = 17/176 (9%)
Query: 727 LRLLRYIKGTPGQGLLLPSTNNLELKAYCDSDWA-GCRMTRRSISGYCVFLGTSMIXWKS 785
+R+L Y+KG PG+GL P ++L+++ Y ++DWA GC+ TRRSIS C F W
Sbjct: 1 MRVLSYLKGCPGKGLFFPRQSSLQIQGYTNADWAVGCKDTRRSISEQCFFC------W-- 52
Query: 786 KKXTNVSRSSAEAEYRAMTNACLEITWLQYILRNLGVKIMKSAKLFCDNQATLHIAANPV 845
SS+EAEYRA+ +A E+ L Y+LR+L V +K L+CDNQ+ ++IAANPV
Sbjct: 53 --------SSSEAEYRALASATCELQRLTYLLRDLKVNCIKPPVLYCDNQSAIYIAANPV 104
Query: 846 FHECTKHIKIDCHIVREKLQLGFIQPCYVPTQMQLADIFTKALGREQFEYLRSKLG 901
FHECTKH++IDCHIVREKLQ G + + ++ Q+AD FTK+L + F L SKLG
Sbjct: 105 FHECTKHLEIDCHIVREKLQAGLFKLLPISSKDQVADFFTKSLLPQPFNPLLSKLG 160
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 77/147 (52%), Positives = 99/147 (67%)
Query: 390 FLAQLTIQVEPTSYDQAVLHPHWQKAMDLELQTLERNHTGSLVSLPAGHKPIGCRWVYKI 449
F+ L EP SY +A W++AM +EL LE T ++ LP+ KPIGCRW+YK+
Sbjct: 902 FILSLHAHTEPKSYTEANKFECWRQAMQVELTALENTGTWKIIDLPSNAKPIGCRWIYKV 961
Query: 450 KYNSDGSIKRYKARLVAKGYTQVEGIDXRETFSPTAKLTTPRCLLTVAAARGWFTHQLDV 509
K+++DG+I+RYKARLVAKGY QVEG+D +T+SP AK TT R +L +A+ W HQLDV
Sbjct: 962 KHHADGTIERYKARLVAKGYNQVEGLDYFDTYSPVAKHTTIRLVLALASLNNWHLHQLDV 1021
Query: 510 QNAFLHGDLHEVVYMIPPPRLRQQGEN 536
NAFLHGDL E VYM PP + N
Sbjct: 1022 NNAFLHGDLQEDVYMDIPPGVSTNKPN 1048
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 153 bits (386), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 123/454 (27%), Positives = 200/454 (44%), Gaps = 109/454 (24%)
Query: 419 ELQTLERNHTGSLVSLPAGHKPIGCRWVYKIKYNSDGSIKRYKARLVAKGYTQVEGIDXR 478
+L++ +N T L+ L G K I +WV+K+K N +G I ++KARLVA+ + + EG
Sbjct: 203 KLKSSGKNQTWELIKLTDGKKAIDVKWVFKLKLNPEGKIVKHKARLVARVFLKKEGF--- 259
Query: 479 ETFSPTAKLTTPRCLLTVAAARGWFTHQLDVQNAFLHGDLHEVVYMIPPPRLRQQGENTV 538
D EVV+
Sbjct: 260 --------------------------------------DYTEVVF--------------- 266
Query: 539 CRLHKSLYGLKQASRNWFSTFSIAIQQAGYTQSKADYSLFIKVQGTSFTAVLIYVDDILL 598
+L+K+LYGLKQA R W + G+ + A++ +++K G+ T++LI +IL
Sbjct: 267 -KLNKALYGLKQAPRAWNKRIEKFFVEQGFKKCLAEHGVYVK--GSEGTSLLIICLEIL- 322
Query: 599 TGNNLREIHQLKQTLLKRFLIKDLGNLKYFLGIEFSRSQQGIFMSQRKYALDILQDTGLL 658
R+ +G+ ++Q KY +I + +L
Sbjct: 323 ------------------------------------RTTKGLILNQTKYDTEIQKKFNML 346
Query: 659 GAKPEAFPMEQQLKLTSTDGEILH-----NPTKFRRLVGRLIYLTVTRPEIVYAVRTLSQ 713
F L + E+ +PT RRL+G L YL +R +I Y+V +S+
Sbjct: 347 D-----FNSSITLAYANNINEVKEEDKGVDPTILRRLIGLLRYLCQSRLDISYSVGIVSK 401
Query: 714 FMGEPRLPHWNAALRLLRYIKGTPGQGLLLPS---TNNLELKAYCDSDWAGCRMTRRSIS 770
FM P H+ AA +++RYI GT G+L P T L + Y D+DW + RR +
Sbjct: 402 FMSNPLKTHFLAAKKIIRYIHGTLQYGILFPEAQETEQLSMIDYSDADWCRDKRDRRRTT 461
Query: 771 GYCVFLGTSMIXWKSKKXTNVSRSSAEAEYRAMTNACLEITWLQYILRNLGVKIMKSAKL 830
+ L + I W SKK V+ SS E EY ++A + WLQ +L +K+ + KL
Sbjct: 462 SFLFMLQGAPISWSSKKQPIVALSSCEVEYVVGSSAACQANWLQNVLEQSMIKLKQPIKL 521
Query: 831 FCDNQATLHIAANPVFHECTKHIKIDCHIVREKL 864
DN+ +++A N + H +KHI+ H +R+++
Sbjct: 522 LIDNKYAINLAKNHISHGKSKHIETKFHYLRDQV 555
>IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
27872933-27871392 E EGN_Mt090430 20090702
Length = 256
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 107/315 (33%), Positives = 146/315 (46%), Gaps = 70/315 (22%)
Query: 589 VLIYVDDILLTGNNLREIHQLKQTLLKRFLIKDLGNLKYFLGIEFSRSQQG-IFMSQRKY 647
+++YV D+++TGNN + QL L F +KDLG LKYFLGIE G + ++Q KY
Sbjct: 1 MIVYVGDMIVTGNNTPLLQQLVSHLNSAFSLKDLGALKYFLGIEVKPQSNGSLLITQSKY 60
Query: 648 ALDILQDTGLLGAKPEAFPMEQQLKLTSTDGEILHNPTKFRRLVGRLIYLTVTRPEIVYA 707
D+L T + AK PM LKL+ +PT R +V L Y + P
Sbjct: 61 VRDLLAKTDMQEAKSLPSPMISDLKLSKDGSTPFSDPTLCRSIVRALQYANLIGP----- 115
Query: 708 VRTLSQFMGEPRLPHWNAALRLLRYIKGTPGQGLLLP--STNNLELKAYCDSDWAGCRMT 765
LS +LR++KGT GLL+ T L + AYCD+DW G
Sbjct: 116 ---LSN---------------VLRHLKGTLSWGLLVRPIPTYPLSILAYCDADW-GSDPD 156
Query: 766 RRSISGYCVFLGTSMIXWKSKKXTNVSRSSAEAEYRAMTNACLEITWLQYILRNLGVKIM 825
RS+ CVFLG ++I W +KK ++RSS EAEY ++ A E+ W++ L V I
Sbjct: 157 DRSVDA-CVFLGPNLISWWAKKQAVIARSSTEAEYSSLALAKSELLWIKTYGARLKV-IQ 214
Query: 826 KSAKLFCDNQATLHIAANPVFHECTKHIKIDCHIVREKLQLGFIQPCYVPTQMQLADIFT 885
K KLF N VP Q+++ DI T
Sbjct: 215 K--KLFVSN---------------------------------------VPGQVKVVDIMT 233
Query: 886 KALGREQFEYLRSKL 900
KAL +FE LR+KL
Sbjct: 234 KALPPTRFEGLRTKL 248
>IMGA|Medtr6g069750.1 Reverse transcriptase, putative
chr06_pseudomolecule_IMGAG_V3 12976555-12977103 H
EGN_Mt090430 20090702
Length = 149
Score = 124 bits (311), Expect = 2e-28, Method: Composition-based stats.
Identities = 65/140 (46%), Positives = 79/140 (56%), Gaps = 28/140 (20%)
Query: 416 MDLELQTLERNHTGSLVSLPAGHKPIGCRWVYKIKYNSDGSIKRYKARLVAKGYTQVEGI 475
M E+ LE T LV LP KPIGCRW+YKIK+ +DGSI+RYKARLV KGY QVEG
Sbjct: 1 MQAEITALENTGTWKLVDLPPNVKPIGCRWIYKIKHYADGSIQRYKARLVVKGYNQVEGW 60
Query: 476 DXRETFSPTAKLTTPR----------------------------CLLTVAAARGWFTHQL 507
D +T+SP AKLTT R ++ +A+ W H+L
Sbjct: 61 DYFDTYSPVAKLTTARLVVKGYNQVEGWDYFDTYSLVAKMTTVRTVIALASINQWHIHKL 120
Query: 508 DVQNAFLHGDLHEVVYMIPP 527
D +AFLHGDL E VYM+ P
Sbjct: 121 DANSAFLHGDLQEDVYMLIP 140
>IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr05_pseudomolecule_IMGAG_V3
36507044-36505941 H EGN_Mt090430 20090702
Length = 367
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 72/113 (63%)
Query: 789 TNVSRSSAEAEYRAMTNACLEITWLQYILRNLGVKIMKSAKLFCDNQATLHIAANPVFHE 848
T VS+SS+EAEYRAM EI WL Y+L++ ++ A L+CD+Q+ HIAAN FHE
Sbjct: 247 TTVSKSSSEAEYRAMATTVCEIQWLTYLLQDFNLQFHTPALLYCDSQSARHIAANTSFHE 306
Query: 849 CTKHIKIDCHIVREKLQLGFIQPCYVPTQMQLADIFTKALGREQFEYLRSKLG 901
TKHI++DCHIVREKLQ V + QLAD+ TK L F SKLG
Sbjct: 307 RTKHIELDCHIVREKLQQKLFHLLPVSSSQQLADVLTKPLDPLPFSNFISKLG 359
>IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33354025-33354392 H EGN_Mt090430 20090702
Length = 108
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 73/105 (69%)
Query: 538 VCRLHKSLYGLKQASRNWFSTFSIAIQQAGYTQSKADYSLFIKVQGTSFTAVLIYVDDIL 597
V L KSLYGLKQASRNW+S S A+ + G+ +S AD+SLF + + F AVLIYVDD++
Sbjct: 2 VYWLRKSLYGLKQASRNWYSKLSQALIEYGFQESHADHSLFTYSRESIFMAVLIYVDDLV 61
Query: 598 LTGNNLREIHQLKQTLLKRFLIKDLGNLKYFLGIEFSRSQQGIFM 642
+ GN+ I KQ L + F +KDLG LKYFLG+E +R G+FM
Sbjct: 62 IAGNDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELARGANGLFM 106
>IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 41676281-41681462 E
EGN_Mt090430 20090702
Length = 479
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 56/83 (67%)
Query: 390 FLAQLTIQVEPTSYDQAVLHPHWQKAMDLELQTLERNHTGSLVSLPAGHKPIGCRWVYKI 449
F+ L EP +Y +A W++AM +EL LE T ++ P KPIGCRW+YKI
Sbjct: 375 FILSLHAHNEPKTYTEANKFECWRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYKI 434
Query: 450 KYNSDGSIKRYKARLVAKGYTQV 472
K+++DG+I+RYKARLVAKGY Q+
Sbjct: 435 KHHADGTIERYKARLVAKGYNQL 457
>IMGA|Medtr5g099250.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
39665230-39664877 H EGN_Mt090430 20090702
Length = 117
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 68/117 (58%)
Query: 596 ILLTGNNLREIHQLKQTLLKRFLIKDLGNLKYFLGIEFSRSQQGIFMSQRKYALDILQDT 655
++++G++ I +LKQ L F +KDL L YFLG+E S +F+SQ KYA D++
Sbjct: 1 MIISGDDSIGIEELKQFLCHHFEMKDLEPLSYFLGLEALSSNDDLFLSQAKYASDLVSQA 60
Query: 656 GLLGAKPEAFPMEQQLKLTSTDGEILHNPTKFRRLVGRLIYLTVTRPEIVYAVRTLS 712
GL K E +E ++ T DG +L + T + VG LIYLT TRP I Y V +S
Sbjct: 61 GLTDCKIEYTRLEPNIQFTPQDGTLLDDATLYWHFVGSLIYLTNTRPNISYFVHLVS 117
>IMGA|Medtr5g086740.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33353678-33353912 H EGN_Mt090430 20090702
Length = 57
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/67 (52%), Positives = 39/67 (58%), Gaps = 21/67 (31%)
Query: 410 PHWQKAMDLELQTLERNHTGSLVSLPAGHKPIGCRWVYKIKYNSDGSIKRYKARLVAKGY 469
P WQKAM K +GCRWVYKIKY + G I++YKARLVAKGY
Sbjct: 4 PEWQKAM---------------------AKIVGCRWVYKIKYKASGEIEKYKARLVAKGY 42
Query: 470 TQVEGID 476
TQVEG D
Sbjct: 43 TQVEGED 49
>IMGA|Medtr4g025100.1 Integrase, catalytic region; Zinc finger,
CCHC-type; Retrotransposon gag protein, putative
chr04_pseudomolecule_IMGAG_V3 5913545-5913860 H
EGN_Mt090430 20090702
Length = 84
Score = 70.1 bits (170), Expect = 5e-12, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 44/65 (67%)
Query: 801 RAMTNACLEITWLQYILRNLGVKIMKSAKLFCDNQATLHIAANPVFHECTKHIKIDCHIV 860
+A+ A E W+ Y L + + ++CDN +++HI ANPVFHE TKHI+IDCH+V
Sbjct: 2 QALAQATSEGKWILYFLDDFPIPHSSPIIIYCDNNSSMHIVANPVFHERTKHIEIDCHVV 61
Query: 861 REKLQ 865
R+K++
Sbjct: 62 RDKIK 66
>IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein,
chr08_pseudomolecule_IMGAG_V3 22106944-22106630 H
EGN_Mt090430 20090702
Length = 104
Score = 68.9 bits (167), Expect = 9e-12, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 56/93 (60%)
Query: 416 MDLELQTLERNHTGSLVSLPAGHKPIGCRWVYKIKYNSDGSIKRYKARLVAKGYTQVEGI 475
M +L+ + + SL +L IGC+W Y+IK+ +G+I+R+K L+ K YT+ EG+
Sbjct: 1 MTNKLRAITTKNAWSLTALSKDKVVIGCKWEYRIKHKVNGTIERFKTFLMVKDYTRQEGV 60
Query: 476 DXRETFSPTAKLTTPRCLLTVAAARGWFTHQLD 508
+ +TFS AK+T LL++ A+G QLD
Sbjct: 61 NSLDTFSLVAKITIVCLLLSIVVAKGRILQQLD 93
>IMGA|AC235756_37.1 Copia protein, related AC235756.1 212505-212236
H EGN_Mt090430 20090702
Length = 89
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/85 (40%), Positives = 53/85 (62%)
Query: 817 LRNLGVKIMKSAKLFCDNQATLHIAANPVFHECTKHIKIDCHIVREKLQLGFIQPCYVPT 876
++ L ++ K KL DN++T+++A NP+ +KHIK H +RE++ I+ Y PT
Sbjct: 1 MKELHCEVKKPLKLKIDNRSTINLAKNPIARGRSKHIKARFHFIREQVTKEMIEVEYCPT 60
Query: 877 QMQLADIFTKALGREQFEYLRSKLG 901
++QL D FTKA ++F LR KLG
Sbjct: 61 EVQLGDGFTKAFKIDRFTCLRDKLG 85
>IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
24473881-24473486 H EGN_Mt090430 20090702
Length = 131
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 3/126 (2%)
Query: 636 SQQGIFMSQRKYALDILQDTGLLGAKPEAFPMEQQLKLTSTDGEILHNPTKFRRLVGRLI 695
+ +G+ + Q YA +IL+ +L + + + + +PT FRRL+G L
Sbjct: 6 NSKGLILHQTDYASEILKKFNMLDCNSTITHADANIIYEVKEEDEGVDPTMFRRLIGSLR 65
Query: 696 YLTVTRPEIVYAVRTLSQFMGEPRLPHWNAALRLLRYIKGTPGQGLL---LPSTNNLELK 752
YL +RP I Y V +S+FM P ++ +A ++LRYI T G+L + +T L+++
Sbjct: 66 YLCQSRPGISYLVGIVSRFMSNPLKTNFLSAKKILRYINSTLQYGILFLVVQATEQLDME 125
Query: 753 AYCDSD 758
Y D+D
Sbjct: 126 GYSDAD 131
>IMGA|Medtr4g045170.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 10725937-10725201 H
EGN_Mt090430 20090702
Length = 197
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 58/98 (59%)
Query: 603 LREIHQLKQTLLKRFLIKDLGNLKYFLGIEFSRSQQGIFMSQRKYALDILQDTGLLGAKP 662
L I + ++ ++++F + DLG++ YFLGIEF R + + M QR+YA+ IL+ +
Sbjct: 20 LAHISEFRKDMMRQFEMTDLGHISYFLGIEFHRRSRDLLMHQRRYAIKILKKFDIEYRNH 79
Query: 663 EAFPMEQQLKLTSTDGEILHNPTKFRRLVGRLIYLTVT 700
P + +L+ + E +PT++ RL+G +++ VT
Sbjct: 80 AVTPAKTIFQLSKNNDESDVDPTQYGRLIGSQVFIAVT 117
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 49/83 (59%)
Query: 818 RNLGVKIMKSAKLFCDNQATLHIAANPVFHECTKHIKIDCHIVREKLQLGFIQPCYVPTQ 877
R +G ++ + L DN +T+++A NP+ H +KHI++ H +RE++ G ++ + ++
Sbjct: 106 RLIGSQVFIAVTLKIDNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSE 165
Query: 878 MQLADIFTKALGREQFEYLRSKL 900
Q+AD+ TK + E F R +
Sbjct: 166 NQIADVLTKGVKIEVFTKPRDSM 188
>IMGA|Medtr3g162300.1 retrotransposon like protein, putative
chr03_pseudomolecule_IMGAG_V3 42355834-42354953 H
EGN_Mt090430 20090702
Length = 58
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/43 (65%), Positives = 33/43 (76%)
Query: 759 WAGCRMTRRSISGYCVFLGTSMIXWKSKKXTNVSRSSAEAEYR 801
WAGC +TRRS + YC+FLG++ I W SKK VSRSS EAEYR
Sbjct: 8 WAGCPLTRRSTTDYCIFLGSNCISWASKKQPTVSRSSTEAEYR 50
>IMGA|Medtr8g012170.1 polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 1857213-1857446 H
EGN_Mt090430 20090702
Length = 77
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 41/67 (61%)
Query: 533 QGENTVCRLHKSLYGLKQASRNWFSTFSIAIQQAGYTQSKADYSLFIKVQGTSFTAVLIY 592
Q N VC+L KSLYGLKQA + WF + + +K+D SLFI V+ +F L+Y
Sbjct: 11 QHPNQVCKLRKSLYGLKQAPQAWFQALQKFLLGYNFQNAKSDTSLFIYVKANTFAYFLVY 70
Query: 593 VDDILLT 599
VDDI LT
Sbjct: 71 VDDIPLT 77
>IMGA|Medtr4g104330.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 22711685-22712637 H
EGN_Mt090430 20090702
Length = 196
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 72/180 (40%), Gaps = 58/180 (32%)
Query: 593 VDDILLTGNNLREIHQLKQTLLKRFLIKDLGNLKYFLGIEFSRSQQGIFMSQRKYALDIL 652
+DD+++TG+N EI + K + F + DLG L YFLGI+F + + + M Q K LDI
Sbjct: 1 MDDLMVTGSNKAEIEEFKLRMKSEFEMTDLGKLAYFLGIKFMETSRALVMHQEK--LDIC 58
Query: 653 QDTGLLGAKPEAFPMEQQLKLTSTDGEILHNPTKFRRLVGRLIYLTVTRPEIVYAVRTLS 712
GL A R +S
Sbjct: 59 FAIGL-------------------------------------------------ASRFMS 69
Query: 713 QFMGEPRLPHWNAALRLLRYIKGTPGQGLLLP---STNNLELKAYCDSDWAGCRMTRRSI 769
+ P H+ A +LRYIKG G+L P T LEL+ + D DW G + R +
Sbjct: 70 K----PMKTHFLVAKCILRYIKGKIQYGILFPISQMTEKLELEGFLDDDWYGDEVEREGV 125
>IMGA|Medtr7g135120.1 Copia protein, related
chr07_pseudomolecule_IMGAG_V3 32083970-32083668 H
EGN_Mt090430 20090702
Length = 100
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 827 SAKLFCDNQATLHIAANPVFHECTKHIKIDCHIVREKLQLGFIQPCYVPTQMQLADIFTK 886
+ KL DN++ +++A N +FH KH++ H +R+++ + Y PTQ QL D+FTK
Sbjct: 11 AVKLKSDNKSAINLAKNSIFHGKRKHVETRFHFMRDQVNKNELIVEYCPTQDQLTDLFTK 70
Query: 887 ALGREQFEYLRSKL 900
AL R+QF LR ++
Sbjct: 71 ALKRDQFLKLRREI 84
>IMGA|Medtr8g096240.1 hypothetical protein
chr08_pseudomolecule_IMGAG_V3 21119820-21118370 E
EGN_Mt090430 20090702
Length = 93
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 500 RGWFTHQLDVQNAFLHGDLHEVVYMIPPPRLRQQGE--NTVCRLHKSLYGLKQASRNWFS 557
+ + HQLD+++AF GD+ E VY+ PPPR QG+ + V RL+K+ Y LKQ+ R W
Sbjct: 25 KNYVLHQLDIKHAFQFGDVIEKVYIEPPPRFIAQGDLCDFVYRLYKASYNLKQSLRAWSD 84
Query: 558 TFSIAIQQ 565
S +Q+
Sbjct: 85 KVSAVLQK 92
>IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 2876704-2878630 E
EGN_Mt090430 20090702
Length = 64
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 33/57 (57%)
Query: 507 LDVQNAFLHGDLHEVVYMIPPPRLRQQGENTVCRLHKSLYGLKQASRNWFSTFSIAI 563
+DV NAFLHGDL E VYM P VC+L KS Y LK A + WF+ +A+
Sbjct: 1 MDVHNAFLHGDLQEDVYMKLPRGFHTSSSRLVCKLRKSQYVLKHAPQCWFAKRLVAL 57
>IMGA|Medtr8g043360.1 Copia protein, related
chr08_pseudomolecule_IMGAG_V3 9348610-9348290 H
EGN_Mt090430 20090702
Length = 106
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 812 WLQYILRNLGVKIMKSAKLFCDNQATLHIAANPVFHECTKHIKIDCHIVREKLQLGFIQP 871
W++ + L + KL DN++T+ +A +P+ H +KHI+ H +R+++ +
Sbjct: 9 WIEMLSEELNAFEVDRIKLLVDNKSTIDLADHPISHGISKHIERKFHFLRDQVNKMKLDL 68
Query: 872 CYVPTQMQLADIFTKALGREQFEYLR 897
Y T++QLA+IFTK L + F+ L+
Sbjct: 69 EYCNTEVQLANIFTKPLKKAMFDELK 94
>IMGA|Medtr3g097190.1 copia-type polyprotein, putative
chr03_pseudomolecule_IMGAG_V3 23165389-23165052 H
EGN_Mt090430 20090702
Length = 85
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 742 LLPSTNNL---ELKAYCDSDWAGCRMTRRSISGYCVF-LGTSMIXWKSKKXTNVSRSSAE 797
+ P+TN +L+ Y DSD G RM RRS SG C+F + I W +K+ + SS E
Sbjct: 1 MFPATNKKGESKLEGYSDSDRCGDRMDRRSTSG-CLFKFNDAAISWCTKRQPITALSSCE 59
Query: 798 AEYRAMTNACLEITWLQYILRNL 820
AEY A T A + WL +++ L
Sbjct: 60 AEYIAGTFAACQAIWLDNVIKEL 82
>IMGA|Medtr8g081950.1 lectin receptor kinase, related
chr08_pseudomolecule_IMGAG_V3 16974207-16974491 H
EGN_Mt090430 20090702
Length = 94
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 565 QAGYTQSKADYSLF-IKVQGTSFTAVLIYVDDILLTGNNLREIHQLKQTLLKRFLIKDLG 623
QA + +++ ++ IK + + +YV+D L+T +N I++ K L+K F + DLG
Sbjct: 3 QALCNKCDSEHGMYVIKDKSKGVIILYLYVNDFLITCSNGSYINEFKNDLMKEFEMVDLG 62
Query: 624 NLKYFLGIEFSRSQQGIFMSQRKYALDILQ 653
++ YFL +EF R+ + S+ YA +IL+
Sbjct: 63 HISYFLRMEFQRTSRASNSSKEIYASEILK 92
>IMGA|Medtr7g021510.1 Integrase, catalytic region; Zinc finger,
CCHC-type; Retrotransposon gag protein, putative
chr07_pseudomolecule_IMGAG_V3 5264429-5264084 H
EGN_Mt090430 20090702
Length = 98
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 21/99 (21%)
Query: 803 MTNACLEITWLQYILRNLGVKIMKSAKLFCDNQATLHIAANPVFHECTKHIKIDCHIVRE 862
M N E+ W++ +L +L + L C++Q LHIA VFH TK+I++DCH +
Sbjct: 1 MANTTCELKWIKSLLLDLNILHKGPMLLNCNSQTALHIAKKLVFHYRTKYIQVDCHFIY- 59
Query: 863 KLQLGFIQPCYVPTQMQLADIFTKALGREQFEYLRSKLG 901
+FTKAL R QF+ + K+
Sbjct: 60 --------------------LFTKALERHQFQTVLGKMA 78
>IMGA|Medtr5g015200.1 Helix-turn-helix, AraC type
chr05_pseudomolecule_IMGAG_V3 5047325-5042492 H
EGN_Mt090430 20090702
Length = 372
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 27/37 (72%)
Query: 831 FCDNQATLHIAANPVFHECTKHIKIDCHIVREKLQLG 867
F DNQ HIA N VF E T HI+IDCH++R+K+Q G
Sbjct: 97 FYDNQYGFHIAVNSVFCEQTIHIEIDCHVIRDKIQAG 133
>IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG_V3
9341518-9340611 H EGN_Mt090430 20090702
Length = 155
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 766 RRSISGYCVFLGTSMIXWKSKKXTNVSRSSAEAEYRAMTNACLEITWLQYILRNLGVKIM 825
++S + Y +G + I W SKK V+ SS+EA+Y A + A + W++ +L L +
Sbjct: 71 KKSTTCYLFMIGAAPISWSSKKQGIVALSSSEAKYVATSYAACQALWIEMLLEELNAFEV 130
Query: 826 KSAKLFCDNQATLHIAANPVFH 847
KL DN+ + +A P+ H
Sbjct: 131 DRIKLLVDNKLAIDLADRPISH 152