Jatropha Genome Database

JcCB0124021.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0124021.20 - phase: 0 /partial
         (550 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g109790.1 Cyclin-like F-box chr04_pseudomolecule_IMGA...   644   0.0  
IMGA|Medtr8g120510.1 Cyclin-like F-box chr08_pseudomolecule_IMGA...    49   8e-06

>IMGA|Medtr4g109790.1 Cyclin-like F-box
           chr04_pseudomolecule_IMGAG_V3 24681704-24684263 E
           EGN_Mt090430 20090702
          Length = 711

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/543 (60%), Positives = 390/543 (71%), Gaps = 33/543 (6%)

Query: 33  EDLPPVLQAYPDVSKSLTCLDLLTVSLTDGFKAHEIRVITAACTNLTKFLVVCMFDPSYL 92
           EDLPPVL      + SL  L+LLT S T+GFK+++I  IT++C NL  FLV C FDP Y+
Sbjct: 177 EDLPPVLAENTTTAASLRRLNLLTTSFTEGFKSNQIESITSSCPNLEHFLVACTFDPRYI 236

Query: 93  GFIGDETLLAIAANCPKLSVLHLVDTSSLGNTRHDPEDEGYTGEDARISVVGLVDFFSGL 152
           GF+GDETLLA+A+NCPKL +LH+ DTSS  N R   E+EG   EDAR+S   LV  F+GL
Sbjct: 237 GFVGDETLLAVASNCPKLKLLHMADTSSFSNRR---EEEGV--EDARVSRATLVALFTGL 291

Query: 153 PXXXXXXXXXXKNVRDSAVAFEALNSRCPKLKVLNLEQFHGICMAVESQLDGIALCSGLE 212
           P          KNV +++ A E L+S+CP LKV+ L QF GIC+A+ S+LDGIALC GL+
Sbjct: 292 PLLEELVLDVCKNVTETSFALEMLSSKCPNLKVVKLGQFQGICLAIGSRLDGIALCHGLQ 351

Query: 213 SLSIKKAADLTDMGLIEIARGCHKLAKFEVEGCKKITMKGIRTMASLLHKTLIEVKISAC 272
           SLS+    DL DMGLIEI RGC +L +FE++GCK +T KG+RTMA LL +TLI+VK+++C
Sbjct: 352 SLSVNTCGDLDDMGLIEIGRGCSRLVRFEIQGCKLVTEKGLRTMACLLRRTLIDVKVASC 411

Query: 273 KNLDTAAILRALEPIRSRIERLHIDCIWDGLPESTCAANHSFNLNDNLFDE--------- 323
            NLD AA LRALEPIR RIERLH+DCIW    ES       FN + N  DE         
Sbjct: 412 VNLDAAATLRALEPIRDRIERLHLDCIWK---ESDNFGQGLFNFDLNTLDELNGSELMDC 468

Query: 324 ----------SSSKNKRLKYS--SDARYVESDLDGFWCK----SWDKLRYLSLWIGVGEL 367
                     S  K +R +Y   +D  +V+S+ +G        SWD+L YLSLWI VGEL
Sbjct: 469 FGGEECGEDTSMRKRQRCEYGLEADDLFVQSNGNGNGNGYYGYSWDRLEYLSLWIKVGEL 528

Query: 368 LNPLPMAGLEDCPSLEEIRIRVEGDCRGRHKPLQHAFGLSCLAQYHRLSKMQLDCSDTIG 427
           L  LP+AGLEDCP+LEEIRI+VEGDCRG+ KP    FGLS LA Y +LSKMQLDC DT G
Sbjct: 529 LTQLPVAGLEDCPNLEEIRIKVEGDCRGQPKPAVREFGLSILACYPQLSKMQLDCGDTKG 588

Query: 428 FALTAPSGQMDLSLWERFFLNGIGNLSLNELDYWPPQDRDVNQRSLSLPGAGLLAECLTL 487
           +  TAPSGQ+DLS WERFFLNGIG+LSLNEL YWPPQD DVNQRSLSLP AGLL EC TL
Sbjct: 589 YVYTAPSGQLDLSWWERFFLNGIGSLSLNELHYWPPQDEDVNQRSLSLPAAGLLQECYTL 648

Query: 488 RKLFIHGTAHEHFMMFLLRIPNLRDVQLREDYYPAPENDMSTEMRADSCCRFEDALNRRH 547
           RKLFIHGT HEHFM + L+IPNLRDVQLREDYYPAPENDMSTEMR  SC RFEDALNRR 
Sbjct: 649 RKLFIHGTTHEHFMNYFLKIPNLRDVQLREDYYPAPENDMSTEMRVGSCIRFEDALNRRQ 708

Query: 548 ILD 550
           I D
Sbjct: 709 ICD 711


>IMGA|Medtr8g120510.1 Cyclin-like F-box
           chr08_pseudomolecule_IMGAG_V3 27575566-27578422 E
           EGN_Mt090430 20090702
          Length = 633

 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 15/138 (10%)

Query: 131 EGYTGEDARISVVGL-VDFFSGLPXXXXXXXXXXKNVRDSAVAFEALNSRCPKLKVLNLE 189
           EG    D R++ + +      GL           + V D  ++  A+   CP L+ L+L 
Sbjct: 131 EGRKATDVRLAAIAVGTGCCGGLGKLYIRGNNSTRGVTDRGLS--AVACGCPSLRSLSLW 188

Query: 190 QF-----HGICMAVESQLDGIALCSGLESLSIKKAADLTDMGLIEIARGCHKLAKFEVEG 244
                   G+C   +        C  LE+L +  ++ +T+ GLI IA GC  L    +E 
Sbjct: 189 NVSSIGDKGLCEIAKG-------CHMLETLDLSHSSSITNKGLIAIAEGCPNLTTLNIES 241

Query: 245 CKKITMKGIRTMASLLHK 262
           C  I  +G++T+A L  K
Sbjct: 242 CSMIGNEGLQTVAKLCPK 259