Jatropha Genome Database

JcCB0123131.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0123131.20 + phase: 0 
         (523 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g024130.1 Rab GTPase activator chr05_pseudomolecule_I...   542   e-154
IMGA|Medtr5g024130.2 Rab escort (choroideraemia) protein chr05_p...   320   8e-88
IMGA|Medtr4g121110.1 Rab GTPase activator chr04_pseudomolecule_I...   106   2e-23
IMGA|Medtr4g137200.1 Rab GTPase activator chr04_pseudomolecule_I...    95   7e-20
IMGA|Medtr5g025160.1 Rab GTPase activator chr05_pseudomolecule_I...    74   1e-13
IMGA|Medtr5g025190.1 Protein kinase chr05_pseudomolecule_IMGAG_V...    60   3e-09
IMGA|Medtr5g024100.1 Rab GTPase activator chr05_pseudomolecule_I...    54   2e-07

>IMGA|Medtr5g024130.1 Rab GTPase activator
           chr05_pseudomolecule_IMGAG_V3 9548364-9542041 F
           EGN_Mt090430 20090702
          Length = 552

 Score =  542 bits (1397), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 284/509 (55%), Positives = 351/509 (68%), Gaps = 28/509 (5%)

Query: 7   YPPIDPTTFDLIVVGTGLPESVIAAAASASGKSVLHLDHNHFYGSHFSSLSIPDLXXXXX 66
           YPPIDP  FDLI+VGTGL ES+I+AAASA GK++LHLD N FYGSHF+SLS  DL     
Sbjct: 10  YPPIDPINFDLIIVGTGLSESIISAAASAVGKTILHLDPNPFYGSHFASLSFEDLISHLN 69

Query: 67  XXXXXXXXXXXXXXXANADDFSVVNLAIRPLYSDVEISSFSA----QLLQEHSNKFNLDV 122
                           +  D++ VNL  + ++SD E +S ++    Q L+E+S KFNLD+
Sbjct: 70  SPPKYITATATAT--TDNSDYTTVNLIQQTIFSDAEFNSCNSIEESQFLRENSRKFNLDL 127

Query: 123 SGPRVLFCADKSVNLLLKSGASQYVEFKSIDASFVGDENGNLWNVPDSRASIFKDKSLSL 182
           +GPR LF ADK+++LLLKSGA+QY+EFK IDAS V + N  L NVPDSR +IF+DK+LSL
Sbjct: 128 AGPRALFSADKTIDLLLKSGAAQYLEFKGIDASLVYNTNEGLVNVPDSRGAIFRDKNLSL 187

Query: 183 MEKNRLMRFFKLVQGQLAATXXXXXXXXXXXXXXXXXXXXXKISVEDLESPFVEFLTKMX 242
            EKN+LM+FFKLVQ  L                        KIS ED+ES FV +L K+ 
Sbjct: 188 KEKNQLMKFFKLVQQHLGGNEDE------------------KISEEDMESSFVSYLEKLG 229

Query: 243 XXXXXXXXXXYAIAMADYDQDNIGACKGLLKTKDGIDRLATYQSSVGRFTNALGAFIYPI 302
                     YAIAM D+DQ+N G CK LLKTKDGIDRLA Y SSVGR+ NA GA +YPI
Sbjct: 230 LPSKIKAILLYAIAMVDFDQENGGVCKDLLKTKDGIDRLAQYSSSVGRYPNAPGALLYPI 289

Query: 303 YGQGEMPPAFCRRAAVKGSIYVLRMPVIALLMDKSSGGYKGIRLASGQDIFSQKLVLDPS 362
           YG+GE+P AFCRRAAVKG IYVLRMPVI+LL+DK +G YKG+RL+SGQD++S KL+LDPS
Sbjct: 290 YGEGELPQAFCRRAAVKGCIYVLRMPVISLLIDKVTGSYKGVRLSSGQDLYSHKLILDPS 349

Query: 363 LTVPS-PSASPLDSPHENFQFLCVRDVKQKVARGICIIRSSLKPDIANFLVVYPPRSLYP 421
            T+PS PS SP D    + Q L   D+K  VARGICI RSS+KPD++N  VVYPPRSLYP
Sbjct: 350 FTIPSTPSLSPKDF---SLQMLSHVDIKGMVARGICITRSSIKPDVSNCSVVYPPRSLYP 406

Query: 422 EQMTSIRALQIGGSLAVCPPDTFVLYLSALCDDVHQGKKXXXXXXXXXXTCPDSGQPETS 481
           +Q+TS+RALQIG +LAVCP DTFVLY S LC+D ++G K          T P SG  E+S
Sbjct: 407 DQVTSVRALQIGSNLAVCPADTFVLYFSTLCNDANEGMKLLKASMNALLTPPVSGNTESS 466

Query: 482 SLDQTENAVAKPILLWSALYIQELTTVCF 510
              Q+ +   KP++LWSA YIQ+LT+  F
Sbjct: 467 PNVQSGSEDKKPVVLWSAFYIQKLTSSKF 495


>IMGA|Medtr5g024130.2 Rab escort (choroideraemia) protein
           chr05_pseudomolecule_IMGAG_V3 9548364-9542041 F
           EGN_Mt090430 20090702
          Length = 309

 Score =  320 bits (821), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 159/255 (62%), Positives = 193/255 (75%), Gaps = 4/255 (1%)

Query: 257 MADYDQDNIGACKGLLKTKDGIDRLATYQSSVGRFTNALGAFIYPIYGQGEMPPAFCRRA 316
           M D+DQ+N G CK LLKTKDGIDRLA Y SSVGR+ NA GA +YPIYG+GE+P AFCRRA
Sbjct: 1   MVDFDQENGGVCKDLLKTKDGIDRLAQYSSSVGRYPNAPGALLYPIYGEGELPQAFCRRA 60

Query: 317 AVKGSIYVLRMPVIALLMDKSSGGYKGIRLASGQDIFSQKLVLDPSLTVPS-PSASPLDS 375
           AVKG IYVLRMPVI+LL+DK +G YKG+RL+SGQD++S KL+LDPS T+PS PS SP D 
Sbjct: 61  AVKGCIYVLRMPVISLLIDKVTGSYKGVRLSSGQDLYSHKLILDPSFTIPSTPSLSPKDF 120

Query: 376 PHENFQFLCVRDVKQKVARGICIIRSSLKPDIANFLVVYPPRSLYPEQMTSIRALQIGGS 435
              + Q L   D+K  VARGICI RSS+KPD++N  VVYPPRSLYP+Q+TS+RALQIG +
Sbjct: 121 ---SLQMLSHVDIKGMVARGICITRSSIKPDVSNCSVVYPPRSLYPDQVTSVRALQIGSN 177

Query: 436 LAVCPPDTFVLYLSALCDDVHQGKKXXXXXXXXXXTCPDSGQPETSSLDQTENAVAKPIL 495
           LAVCP DTFVLY S LC+D ++G K          T P SG  E+S   Q+ +   KP++
Sbjct: 178 LAVCPADTFVLYFSTLCNDANEGMKLLKASMNALLTPPVSGNTESSPNVQSGSEDKKPVV 237

Query: 496 LWSALYIQELTTVCF 510
           LWSA YIQ+LT+  F
Sbjct: 238 LWSAFYIQKLTSSKF 252


>IMGA|Medtr4g121110.1 Rab GTPase activator
           chr04_pseudomolecule_IMGAG_V3 28290750-28286757 H
           EGN_Mt090430 20090702
          Length = 445

 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 105/386 (27%), Positives = 158/386 (40%), Gaps = 86/386 (22%)

Query: 15  FDLIVVGTGLPESVIAAAASASGKSVLHLDHNHFYGSHFSSLSIPDLXXXXXXXXXXXXX 74
           +D+IV+GTGL E +++   S  G  VLH+D N +YG   +SL++  L             
Sbjct: 5   YDVIVLGTGLKECILSGLLSVDGLKVLHMDQNDYYGGASTSLNLTQLFKRY--------- 55

Query: 75  XXXXXXXANADDFSVVNLAIRPLYSDVEISSFSAQLLQEHSNKFNLDVSGPRVLFCADKS 134
                     DD     L                      S ++N+D+  P+ +      
Sbjct: 56  --------RGDDKPPEELG--------------------SSREYNVDMI-PKFMMANGAL 86

Query: 135 VNLLLKSGASQYVEFKSIDASFVGDENGNLWNVPDSRASIFKDKSLSLMEKNRLMRFFKL 194
           V +L+ +  ++Y+ FK++D SFV ++ G ++ VP +     K   + L EK R  +FF  
Sbjct: 87  VRVLIHTDVTKYLNFKAVDGSFVYNK-GKIYKVPATDVEALKSPLMGLFEKRRARKFFIY 145

Query: 195 VQGQLAATXXXXXXXXXXXXXXXXXXXXXKISVEDLESPFVEFLTKMXXXXXXXXXXXYA 254
           VQ   A                        IS   LE   V+F+               A
Sbjct: 146 VQDYEANDPKSHEGLDLNQVTARQL-----ISKYGLEDDTVDFIGHAL-----------A 189

Query: 255 IAMADYDQDNIGACKGLLKTKDGIDRLATYQSSVGRFTNALGAFIYPIYGQGEMPPAFCR 314
           + + D   D           KD +DR+ TY  S+ RF      +IYP+YG GE+P AF R
Sbjct: 190 LHLDDSYLDK--------PAKDFVDRVKTYAESLARFQGG-SPYIYPLYGLGELPQAFAR 240

Query: 315 RAAVKGSIYVLRMPVIALLMDKSSGGYKGIRLAS-GQDIFSQKLVLDPSLTVPSPSASPL 373
            +AV G  Y+L  P   +  D   G  K I + S G+    +K+V DPS  +P       
Sbjct: 241 LSAVYGGTYMLNKPECKVEFD---GDGKAIGVTSDGETAKCKKVVCDPSY-LPDK----- 291

Query: 374 DSPHENFQFLCVRDVKQKVARGICII 399
                      V++V  KVAR ICI+
Sbjct: 292 -----------VQNVG-KVARAICIM 305


>IMGA|Medtr4g137200.1 Rab GTPase activator
           chr04_pseudomolecule_IMGAG_V3 33740121-33733703 E
           EGN_Mt090430 20090702
          Length = 444

 Score = 95.1 bits (235), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 106/446 (23%), Positives = 170/446 (38%), Gaps = 104/446 (23%)

Query: 15  FDLIVVGTGLPESVIAAAASASGKSVLHLDHNHFYGSHFSSLSIPDLXXXXXXXXXXXXX 74
           +D+IV+GTGL E V++   S  G  VLH+D N +YG   +SL++  L             
Sbjct: 5   YDVIVLGTGLKECVLSGLLSVDGLKVLHMDRNDYYGGESTSLNLIQLWKKF--------- 55

Query: 75  XXXXXXXANADDFSVVNLAIRPLYSDVEISSFSAQLLQEHSNKFNLDVSGPRVLFCADKS 134
                     DD    +L                      S  +N+D++ P+ +      
Sbjct: 56  --------RGDDKPPPHLG--------------------SSKDYNIDMN-PKFIMANGTL 86

Query: 135 VNLLLKSGASQYVEFKSIDASFVGDENGNLWNVPDSRASIFKDKSLSLMEKNRLMRFFKL 194
           V +L+ +  ++Y+ FK++D SFV ++   +  VP +     K   + + EK R  +FF  
Sbjct: 87  VRVLIHTDVTKYLYFKAVDGSFVFNK-AKVHKVPSNDMEALKSPLMGIFEKRRARKFFIY 145

Query: 195 VQGQLAATXXXXXXXXXXXXXXXXXXXXXKISVEDLESPFVEFLTKMXXXXXXXXXXXYA 254
           VQ                           +++ ++L + F                    
Sbjct: 146 VQD-----------YNESDPKTHDGMDLTRVTTKELIAKF-------------------- 174

Query: 255 IAMADYDQDNIGACKGLLKTK--------DGIDRLATYQSSVGRFTNALGAFIYPIYGQG 306
             + D   D IG    L +          D + R+  Y  S+ RF      +IYP+YG G
Sbjct: 175 -GLDDNTVDFIGHALALHRDDRYLNEPALDTVKRMKLYAESLARFQGG-SPYIYPLYGLG 232

Query: 307 EMPPAFCRRAAVKGSIYVLRMPVIALLMDKSSGGYKGIRLASGQDIFSQKLVLDPSLTVP 366
           E+P AF R +AV G  Y+L  P   +  D   G   G+  + G+    +KLV DPS    
Sbjct: 233 ELPQAFARLSAVYGGTYMLNKPECKVEFD-DQGKVIGVT-SEGETAKCKKLVCDPSYLTN 290

Query: 367 SPSASPLDSPHENFQFLCVRDVKQKVARGICIIRSSL--KPDIANFLVVYPPRSLYPEQM 424
                             VR V  KVAR I I+   +    D  +  V+ P + L   + 
Sbjct: 291 K-----------------VRKV-GKVARAIAIMSHPIPNTNDSQSVQVILPQKQL--GRK 330

Query: 425 TSIRALQIGGSLAVCPPDTFVLYLSA 450
           + +       S  VCP   F+ ++S 
Sbjct: 331 SDMYLFCCSYSHNVCPKGKFIAFVST 356


>IMGA|Medtr5g025160.1 Rab GTPase activator
           chr05_pseudomolecule_IMGAG_V3 10073279-10072924 E
           EGN_Mt090430 20090702
          Length = 81

 Score = 74.3 bits (181), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/82 (48%), Positives = 53/82 (64%), Gaps = 3/82 (3%)

Query: 257 MADYDQDNIGACKGLLKTKDGIDRLATYQSSVGRFTNALGAFIYPIYGQGEMPPAFCRRA 316
           M D+DQ+N    K LLKTK+GIDRLA   SSV    +A    + PIYG+G++  AFCRRA
Sbjct: 1   MVDFDQENDEVWKDLLKTKEGIDRLAQCSSSV---RSAPKTLLCPIYGEGKLRQAFCRRA 57

Query: 317 AVKGSIYVLRMPVIALLMDKSS 338
           A+KG IYV  +  ++L   + S
Sbjct: 58  AIKGCIYVSFIGFMSLFCFRKS 79


>IMGA|Medtr5g025190.1 Protein kinase chr05_pseudomolecule_IMGAG_V3
           10079246-10078165 E EGN_Mt090430 20090702
          Length = 242

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 52/99 (52%), Gaps = 27/99 (27%)

Query: 322 IYVLRMPVIALLMDKSSGGYKGIRLASGQDIFSQKLVLDPSLTV-PSPSASPLDSPHENF 380
           + VLRMPVI LL                        +L+PS T+  SPS SP D   E  
Sbjct: 164 LQVLRMPVIYLL------------------------ILNPSFTILSSPSLSPNDFSSEML 199

Query: 381 QFLCVRDVKQKVARGICIIRSS--LKPDIANFLVVYPPR 417
           + L ++D+K  VA+GICI RS   ++PD++N  VVYP R
Sbjct: 200 KMLSLKDIKGMVAKGICITRSRSFIQPDVSNCSVVYPLR 238


>IMGA|Medtr5g024100.1 Rab GTPase activator
           chr05_pseudomolecule_IMGAG_V3 9540304-9537883 E
           EGN_Mt090430 20090702
          Length = 132

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/35 (68%), Positives = 26/35 (74%)

Query: 290 RFTNALGAFIYPIYGQGEMPPAFCRRAAVKGSIYV 324
           RF NA GA +YPIYG+GE   AFCR  AVKG IYV
Sbjct: 48  RFPNAPGALLYPIYGEGEPTQAFCRHTAVKGHIYV 82