Jatropha Genome Database

JcCB0123131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0123131.10 + phase: 0 /partial
         (197 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g088030.1 H+-transporting two-sector ATPase, alpha/be...   350   3e-97
IMGA|Medtr3g080760.1 Nucleotide-binding, alpha-beta plait chr03_...   205   1e-53

>IMGA|Medtr8g088030.1 H+-transporting two-sector ATPase, alpha/beta
           subunit, central region; RNA-binding region RNP-1 (RNA
           recognition motif) chr08_pseudomolecule_IMGAG_V3
           18541212-18538957 F EGN_Mt090430 20090702
          Length = 290

 Score =  350 bits (898), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 165/193 (85%), Positives = 181/193 (93%)

Query: 5   LTIFKFFAGLDIVDVLLVNKNGRFTGEAFVVFAGSMQVEFALQRDRQNMGRRYVEVFRCK 64
           + I KFFAGL IVDVLLVNK+GRF+GEAFVVFAG+MQVEFALQRDRQNMGRRYVEVFRCK
Sbjct: 98  IDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQNMGRRYVEVFRCK 157

Query: 65  RQDYYNAVAAEVNYEGIYDTDYHGSPPPSKAKRFSDKEQLEYTEILKMRGLPFSVKKPEI 124
           +QDYYNAVA E+NYEGIYD DY GSPPPS++KRFSDKEQ++YTEILKMRGLPF V K +I
Sbjct: 158 KQDYYNAVAGEINYEGIYDNDYQGSPPPSRSKRFSDKEQMDYTEILKMRGLPFLVTKSQI 217

Query: 125 IDFFKEFKLVEERIHIACRPDGKATGEAYVEFVSAEEAKRAMSKDKMTIGSRYVELFPST 184
           IDFFK++KL+E R+HIACRPDGKATGEAYVEFVS +EAKRAM KDKMTIGSRYVELFPST
Sbjct: 218 IDFFKDYKLIEGRVHIACRPDGKATGEAYVEFVSPDEAKRAMFKDKMTIGSRYVELFPST 277

Query: 185 PDEARRAESRSRQ 197
           PDEARRAESRSRQ
Sbjct: 278 PDEARRAESRSRQ 290



 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 3/73 (4%)

Query: 109 ILKMRGLPFSVKKPEIIDFFKEFKLVEERIHIACRPDGKATGEAYVEFVSAEEAKRAMSK 168
           ++++RGLPF+    +I+ FF    +V+    +     G+ +GEA+V F  A + + A+ +
Sbjct: 85  VVRLRGLPFNCTDIDILKFFAGLTIVDV---LLVNKSGRFSGEAFVVFAGAMQVEFALQR 141

Query: 169 DKMTIGSRYVELF 181
           D+  +G RYVE+F
Sbjct: 142 DRQNMGRRYVEVF 154


>IMGA|Medtr3g080760.1 Nucleotide-binding, alpha-beta plait
           chr03_pseudomolecule_IMGAG_V3 19152731-19147246 E
           EGN_Mt090430 20090702
          Length = 259

 Score =  205 bits (522), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 104/194 (53%), Positives = 136/194 (70%), Gaps = 11/194 (5%)

Query: 7   IFKFFAGLDIVDVLLVNKNGRFTGEAFVVFAGSMQVEFALQRDRQNMGRRYVEVFRCKRQ 66
           + +FF GLDIVDVL V+K G+F+GE F V    +QV+FALQR+RQN+GRRYVEVFR KRQ
Sbjct: 73  VAEFFHGLDIVDVLFVHKGGKFSGEGFCVLGYPLQVDFALQRNRQNIGRRYVEVFRSKRQ 132

Query: 67  DYYNAVAAEVNYEGIYDTDYHGSPPPSKAKRFSD----KEQLEYTEILKMRGLPFSVKKP 122
           +YY A+A EV       +D  G  P   A R       K+  E+T +L++RGLPFS  K 
Sbjct: 133 EYYKAIANEV-------SDARGGSPRRSAPRAKSYDEGKDSAEHTGVLRLRGLPFSANKD 185

Query: 123 EIIDFFKEFKLVEERIHIACRPDGKATGEAYVEFVSAEEAKRAMSKDKMTIGSRYVELFP 182
           +I+DFFKE+ L E+ IHI    +G+ +GEAYVEF +A+++K AM+KD+MT+GSRY+ELFP
Sbjct: 186 DIMDFFKEYVLSEDSIHIVMNSEGRPSGEAYVEFENADDSKAAMAKDRMTLGSRYIELFP 245

Query: 183 STPDEARRAESRSR 196
           ST  E   A SR R
Sbjct: 246 STHGEMEDAISRGR 259