Jatropha Genome Database

JcCB0122531.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0122531.20 - phase: 1 /partial
         (136 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g044600.1 Ubiquitin-associated chr08_pseudomolecule_I...    89   7e-19
IMGA|Medtr5g095840.1 UBA-like chr05_pseudomolecule_IMGAG_V3 3802...    74   2e-14

>IMGA|Medtr8g044600.1 Ubiquitin-associated
           chr08_pseudomolecule_IMGAG_V3 10056327-10059243 F
           EGN_Mt090430 20090702
          Length = 624

 Score = 89.0 bits (219), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 50/100 (50%), Positives = 59/100 (59%), Gaps = 5/100 (5%)

Query: 36  AHVDWNTGVM-PEFDYNSIDWTLDNNMXXXXXXXXXXXXXXXXXXXXXTRMNSMNSSCIS 94
           +HVDWNTG M  EFDYN+IDW+LD                           N M SS ++
Sbjct: 527 SHVDWNTGGMVQEFDYNNIDWSLD----CPPSSRSGDVWLGFSSSLRNNAGNRMASSYMT 582

Query: 95  GLRDAGATKETSSSAGLHEWTSPFAGKDIFSLPRQFVTSP 134
           G R+ G  +E SSSAGL +WTSPFAGKDIFS PR+FVT P
Sbjct: 583 GSRNVGTAREISSSAGLRDWTSPFAGKDIFSAPRKFVTFP 622


>IMGA|Medtr5g095840.1 UBA-like chr05_pseudomolecule_IMGAG_V3
           38029706-38024797 E EGN_Mt090430 20090702
          Length = 669

 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 58/123 (47%), Gaps = 25/123 (20%)

Query: 38  VDWNTGVMPEFDYNSIDWTLDNNMX---------------XXXXXXXXXXXXXXXXXXXX 82
           VDW+TG   +FDY SIDW+LD  +                                    
Sbjct: 546 VDWSTGGSMQFDYTSIDWSLDRGLSSPGSNALWLGLSPFTKSRAQTYDSNSNASGGVAQQ 605

Query: 83  TRMNSM--NSSCIS--------GLRDAGATKETSSSAGLHEWTSPFAGKDIFSLPRQFVT 132
             M S+  N S +S        GL+D GA    +S+AG  EW+SPF GKD+FSLPRQFV+
Sbjct: 606 QTMRSLPSNGSLLSNGSTVPMAGLQDGGAASGETSAAGSREWSSPFEGKDLFSLPRQFVS 665

Query: 133 SPS 135
           SPS
Sbjct: 666 SPS 668