Jatropha Genome Database

JcCB0121691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0121691.10 + phase: 2 /pseudo
         (489 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr6g006620.1 H+-transporting two-sector ATPase, alpha/be...   801   0.0  
IMGA|Medtr5g019940.1 Fumarate reductase/succinate dehydrogenase ...   216   1e-56

>IMGA|Medtr6g006620.1 H+-transporting two-sector ATPase, alpha/beta
           subunit, central region; Rhodopsin-like GPCR
           superfamily; Blue (type 1) copper domain; Fumarate
           reductase, flavoprotein subunit
           chr06_pseudomolecule_IMGAG_V3 982461-987909 E
           EGN_Mt090430 20090702
          Length = 662

 Score =  801 bits (2068), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/481 (80%), Positives = 427/481 (88%), Gaps = 6/481 (1%)

Query: 9   SRSHGVSKILQIQKCNCSQFTIGEHWRSLRMRPVSVSSCLRDGSTRYFDFVVIGSGVAGL 68
           S S  VSK+LQI KC  S+  + ++      R + +SSC +DG T+YFDF VIGSG+AGL
Sbjct: 61  SWSKRVSKVLQIHKCELSRSPLRKN------RKLFISSCKKDGPTKYFDFAVIGSGIAGL 114

Query: 69  RYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPLDSVESHMQDTIVAGANLCDEE 128
           RYALEVAK+GTVAVITKAEPHE NTNYAQGGVSAVL PLDSVESHM+DTIVAGA LCDEE
Sbjct: 115 RYALEVAKYGTVAVITKAEPHECNTNYAQGGVSAVLSPLDSVESHMKDTIVAGAYLCDEE 174

Query: 129 TVRVVCTEGPDRIRELIAMGAMFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALL 188
           +VRVVCTEGPDR+RELIAMG  FDHGEDGNLHLAREGGHSH+RIVHAADMTG+EIERALL
Sbjct: 175 SVRVVCTEGPDRVRELIAMGTSFDHGEDGNLHLAREGGHSHNRIVHAADMTGKEIERALL 234

Query: 189 EAVVNDPKISMFEHHFAIDLLTSQDGLNTVCHGVDTINTESKEVVRFISKVTLLAAGGAG 248
           +AV+N+P I +FEHHFAIDLLT QDG +  C GVDT+NTE+ EVVRF+SK TLLA+GGAG
Sbjct: 235 KAVINNPHIFVFEHHFAIDLLTCQDGSDITCLGVDTLNTETLEVVRFLSKATLLASGGAG 294

Query: 249 HIYPSTTNPLVATGDGIAMAHRAQAVISNMEFVQFHPTALADEGLPIKPNKTRENAFLIT 308
           HIYP TTNPLVATGDGIAMA+RAQAVISNMEFVQFHPTALADEGLP+KP + R+NAFLI+
Sbjct: 295 HIYPKTTNPLVATGDGIAMAYRAQAVISNMEFVQFHPTALADEGLPVKPTEPRDNAFLIS 354

Query: 309 EAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHRPRG 368
           EAVRGDGGILYNL MERFMPLYD+R ELAPRDVVARSIDDQLKKRNEKYVLLDISH+P+ 
Sbjct: 355 EAVRGDGGILYNLAMERFMPLYDKRGELAPRDVVARSIDDQLKKRNEKYVLLDISHKPKN 414

Query: 369 KILSHFPNIAAECLKYGLDITHQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACT 428
           +ILSHFPNIA+ CL+YGLDIT  PIPVVPAAHYMCGGV AGLQGETNV+GLYVAGEVACT
Sbjct: 415 EILSHFPNIASTCLQYGLDITRHPIPVVPAAHYMCGGVHAGLQGETNVKGLYVAGEVACT 474

Query: 429 GLHGANRLASNSLLEALVFARRAVQPSIDHMKSSRLNLSASDCWARPVVPYSLGRNVMDN 488
           GLHGANRLASNSLLEALVFA RAVQPS+D MKSS L+L+AS+ W RP VP+SLG N  D 
Sbjct: 475 GLHGANRLASNSLLEALVFAERAVQPSVDQMKSSSLDLNASNLWPRPTVPFSLGSNANDK 534

Query: 489 I 489
           I
Sbjct: 535 I 535


>IMGA|Medtr5g019940.1 Fumarate reductase/succinate dehydrogenase
           flavoprotein, N-terminal; chr05_pseudomolecule_IMGAG_V3
           7498474-7505943 E EGN_Mt090430 20090702
          Length = 631

 Score =  216 bits (551), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 148/404 (36%), Positives = 205/404 (50%), Gaps = 44/404 (10%)

Query: 74  VAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPL--DSVESHMQDTIVAGANLCDEETV 130
           +++HG   A ITK  P  S+T  AQGG++A L  +  D    HM DT+     L D++ +
Sbjct: 60  LSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAI 119

Query: 131 RVVCTEGPDRIRELIAMGAMFDHGEDGNLHLAREGGHS--------HHRIVHAADMTGRE 182
           + +C E P  + EL   G  F   EDG ++    GG S         +R   AAD TG  
Sbjct: 120 QYMCREAPKAVIELENYGLPFSRTEDGRIYQRAFGGQSLNFGKGGQAYRCACAADRTGHA 179

Query: 183 IERALLEAVVNDPKISMFEHHFAIDLLTSQDGLNTVCHGVDTINTESKEVVRFISKVTLL 242
           +   L    +       F  +FA+DL+ + DG    C GV  +N E   + RF +  T+L
Sbjct: 180 LLHTLYGQAMRH-NTQFFVEYFALDLIMNSDG---SCQGVIALNMEDGTLHRFQAASTIL 235

Query: 243 AAGGAGHIYPSTTNPLVATGDGIAMAHRAQAVISNMEFVQFHPTALADEGLPIKPNKTRE 302
           A GG G  Y S T+    TGDG AMA RA   + ++EFVQFHPT +   G          
Sbjct: 236 ATGGYGRAYFSATSAHTCTGDGNAMAARAGIGLEDLEFVQFHPTGIYGAGC--------- 286

Query: 303 NAFLITEAVRGDGGILYNLGMERFMPLYDERA-ELAPRDVVARSIDDQLKK-----RNEK 356
              LITE  RG+GGIL N   ERFM  Y   A +LA RDVV+RS+  ++++       + 
Sbjct: 287 ---LITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPEKD 343

Query: 357 YVLLDISHRPRGKILSHFPNIAAECLKY-GLDITHQPIPVVPAAHYMCGGVRAGLQGETN 415
           ++ L ++H P   +    P I+     + G+D+T +PIPV+P  HY  GG+     GE  
Sbjct: 344 HIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVV 403

Query: 416 ----------VRGLYVAGEVACTGLHGANRLASNSLLEALVFAR 449
                     V GL  AGE AC  +HGANRL +NSLL+ +VF R
Sbjct: 404 TIKGDDPDALVPGLMAAGEAACASVHGANRLGANSLLDIVVFGR 447