Jatropha Genome Database

JcCB0120561.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0120561.20 + phase: 0 /partial
         (150 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g087520.1 Zinc finger, RING-type; Zinc finger, RanBP2...    47   4e-06

>IMGA|Medtr3g087520.1 Zinc finger, RING-type; Zinc finger,
           RanBP2-type; Zinc finger, C6HC-type
           chr03_pseudomolecule_IMGAG_V3 20862315-20866417 E
           EGN_Mt090430 20090702
          Length = 599

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 42  IITKASLLAAQREDLRRVMELLSLREHHARTLLIHYRWDVERLLAVFVEKGKSYLFTEAG 101
           I+ ++ +   Q +D+R V  +LS+    A  LL HY W+V  +        +++   E G
Sbjct: 57  ILKESDIRERQEDDIRSVAAVLSIPPVAASILLRHYNWNVSNV-------NEAWFADEDG 109

Query: 102 V----TVVEQLDIDSP-LTSSSTITCDICIEDISGDKATRMDCGHCYCNDC 147
           V     ++E+    +P       +TC IC E     K     CGH YC+ C
Sbjct: 110 VRRKVGLLEKPAYKNPDANKMPKLTCGICFEAYRPSKIHTASCGHPYCSSC 160